Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00975

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00970 and ABZR87_RS00975 are separated by 135 nucleotidesABZR87_RS00975 and ABZR87_RS00980 are separated by 264 nucleotides ABZR87_RS00970: ABZR87_RS00970 - molecular chaperone DnaJ, at 192,928 to 194,076 _RS00970 ABZR87_RS00975: ABZR87_RS00975 - molecular chaperone DnaK, at 194,212 to 196,164 _RS00975 ABZR87_RS00980: ABZR87_RS00980 - phospholipase A, at 196,429 to 197,724 _RS00980 Position (kb) 194 195 196 197Strain fitness (log2 ratio) -2 -1 0 1 2 3at 193.313 kb on + strand, within ABZR87_RS00970at 193.313 kb on + strand, within ABZR87_RS00970at 193.357 kb on - strand, within ABZR87_RS00970at 194.118 kb on - strandat 194.181 kb on - strandat 194.181 kb on - strandat 194.181 kb on - strandat 194.185 kb on + strandat 194.213 kb on + strandat 194.213 kb on + strandat 194.213 kb on + strandat 194.213 kb on + strandat 194.214 kb on - strandat 194.214 kb on - strandat 194.256 kb on + strandat 194.354 kb on + strandat 194.355 kb on - strandat 195.584 kb on + strand, within ABZR87_RS00975at 195.731 kb on + strand, within ABZR87_RS00975at 196.205 kb on - strandat 196.205 kb on - strandat 196.205 kb on - strandat 196.205 kb on - strandat 196.314 kb on - strandat 196.314 kb on - strandat 196.378 kb on + strandat 196.378 kb on + strandat 196.378 kb on + strandat 196.378 kb on + strandat 196.378 kb on + strandat 196.379 kb on - strandat 196.379 kb on - strandat 196.597 kb on + strand, within ABZR87_RS00980at 196.597 kb on + strand, within ABZR87_RS00980at 196.597 kb on + strand, within ABZR87_RS00980at 196.597 kb on + strand, within ABZR87_RS00980at 196.597 kb on + strand, within ABZR87_RS00980at 196.597 kb on + strand, within ABZR87_RS00980at 196.597 kb on + strand, within ABZR87_RS00980at 196.597 kb on + strand, within ABZR87_RS00980at 196.597 kb on + strand, within ABZR87_RS00980at 196.597 kb on + strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.598 kb on - strand, within ABZR87_RS00980at 196.675 kb on - strand, within ABZR87_RS00980at 196.729 kb on + strand, within ABZR87_RS00980at 196.729 kb on + strand, within ABZR87_RS00980at 196.731 kb on + strand, within ABZR87_RS00980at 196.731 kb on + strand, within ABZR87_RS00980at 196.731 kb on + strand, within ABZR87_RS00980at 196.953 kb on + strand, within ABZR87_RS00980at 196.954 kb on - strand, within ABZR87_RS00980at 197.155 kb on + strand, within ABZR87_RS00980at 197.155 kb on + strand, within ABZR87_RS00980at 197.155 kb on + strand, within ABZR87_RS00980at 197.155 kb on + strand, within ABZR87_RS00980at 197.155 kb on + strand, within ABZR87_RS00980at 197.155 kb on + strand, within ABZR87_RS00980at 197.155 kb on + strand, within ABZR87_RS00980at 197.155 kb on + strand, within ABZR87_RS00980at 197.155 kb on + strand, within ABZR87_RS00980at 197.156 kb on - strand, within ABZR87_RS00980at 197.156 kb on - strand, within ABZR87_RS00980at 197.156 kb on - strand, within ABZR87_RS00980at 197.156 kb on - strand, within ABZR87_RS00980at 197.156 kb on - strand, within ABZR87_RS00980

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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193,313 + ABZR87_RS00970 0.34 +0.1
193,313 + ABZR87_RS00970 0.34 -0.5
193,357 - ABZR87_RS00970 0.37 -0.5
194,118 - +2.2
194,181 - -0.1
194,181 - +0.2
194,181 - -1.1
194,185 + +1.6
194,213 + -1.7
194,213 + -2.5
194,213 + +0.5
194,213 + +1.2
194,214 - -1.0
194,214 - +1.7
194,256 + +3.1
194,354 + -1.7
194,355 - -0.5
195,584 + ABZR87_RS00975 0.70 +0.1
195,731 + ABZR87_RS00975 0.78 -1.5
196,205 - -0.9
196,205 - -2.3
196,205 - -1.5
196,205 - +0.5
196,314 - +0.1
196,314 - -2.2
196,378 + +0.0
196,378 + +0.2
196,378 + -0.5
196,378 + +0.2
196,378 + +0.3
196,379 - -0.1
196,379 - -1.5
196,597 + ABZR87_RS00980 0.13 +1.0
196,597 + ABZR87_RS00980 0.13 -0.8
196,597 + ABZR87_RS00980 0.13 -0.3
196,597 + ABZR87_RS00980 0.13 +1.0
196,597 + ABZR87_RS00980 0.13 +0.5
196,597 + ABZR87_RS00980 0.13 -0.6
196,597 + ABZR87_RS00980 0.13 +0.8
196,597 + ABZR87_RS00980 0.13 +0.1
196,597 + ABZR87_RS00980 0.13 +1.1
196,597 + ABZR87_RS00980 0.13 +0.2
196,598 - ABZR87_RS00980 0.13 +0.3
196,598 - ABZR87_RS00980 0.13 +1.1
196,598 - ABZR87_RS00980 0.13 +0.2
196,598 - ABZR87_RS00980 0.13 -0.1
196,598 - ABZR87_RS00980 0.13 +0.0
196,598 - ABZR87_RS00980 0.13 -2.2
196,598 - ABZR87_RS00980 0.13 -0.5
196,598 - ABZR87_RS00980 0.13 +0.0
196,598 - ABZR87_RS00980 0.13 -2.2
196,598 - ABZR87_RS00980 0.13 +0.3
196,598 - ABZR87_RS00980 0.13 +1.0
196,675 - ABZR87_RS00980 0.19 -1.1
196,729 + ABZR87_RS00980 0.23 +2.0
196,729 + ABZR87_RS00980 0.23 +0.7
196,731 + ABZR87_RS00980 0.23 +1.1
196,731 + ABZR87_RS00980 0.23 -0.8
196,731 + ABZR87_RS00980 0.23 +0.0
196,953 + ABZR87_RS00980 0.40 -0.9
196,954 - ABZR87_RS00980 0.41 +0.2
197,155 + ABZR87_RS00980 0.56 +1.1
197,155 + ABZR87_RS00980 0.56 +0.0
197,155 + ABZR87_RS00980 0.56 +0.4
197,155 + ABZR87_RS00980 0.56 -0.3
197,155 + ABZR87_RS00980 0.56 -0.0
197,155 + ABZR87_RS00980 0.56 +0.3
197,155 + ABZR87_RS00980 0.56 +1.4
197,155 + ABZR87_RS00980 0.56 -1.7
197,155 + ABZR87_RS00980 0.56 +0.0
197,156 - ABZR87_RS00980 0.56 +0.2
197,156 - ABZR87_RS00980 0.56 +0.5
197,156 - ABZR87_RS00980 0.56 +1.0
197,156 - ABZR87_RS00980 0.56 +0.8
197,156 - ABZR87_RS00980 0.56 +0.5

Or see this region's nucleotide sequence