Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00940 and ABZR87_RS00945 are separated by 29 nucleotides ABZR87_RS00945 and ABZR87_RS00950 are separated by 60 nucleotides ABZR87_RS00950 and ABZR87_RS00955 are separated by 11 nucleotides ABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotides
ABZR87_RS00940: ABZR87_RS00940 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 187,453 to 187,968
_RS00940
ABZR87_RS00945: ABZR87_RS00945 - deoxynucleoside kinase, at 187,998 to 188,642
_RS00945
ABZR87_RS00950: ABZR87_RS00950 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 188,703 to 189,521
_RS00950
ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240
_RS00955
ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935
_RS00960
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 188.142 kb on + strand, within ABZR87_RS00945 at 188.142 kb on + strand, within ABZR87_RS00945 at 188.143 kb on - strand, within ABZR87_RS00945 at 188.143 kb on - strand, within ABZR87_RS00945 at 188.160 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.323 kb on - strand, within ABZR87_RS00945 at 188.323 kb on - strand, within ABZR87_RS00945 at 188.436 kb on + strand, within ABZR87_RS00945 at 188.436 kb on + strand, within ABZR87_RS00945 at 188.436 kb on + strand, within ABZR87_RS00945 at 188.460 kb on + strand, within ABZR87_RS00945 at 188.460 kb on + strand, within ABZR87_RS00945 at 188.461 kb on - strand, within ABZR87_RS00945 at 188.461 kb on - strand, within ABZR87_RS00945 at 188.502 kb on + strand, within ABZR87_RS00945 at 188.502 kb on + strand, within ABZR87_RS00945 at 188.502 kb on + strand, within ABZR87_RS00945 at 188.503 kb on - strand, within ABZR87_RS00945 at 188.505 kb on + strand, within ABZR87_RS00945 at 188.505 kb on + strand, within ABZR87_RS00945 at 188.505 kb on + strand, within ABZR87_RS00945 at 188.505 kb on + strand, within ABZR87_RS00945 at 188.505 kb on + strand, within ABZR87_RS00945 at 188.505 kb on + strand, within ABZR87_RS00945 at 188.506 kb on - strand, within ABZR87_RS00945 at 188.506 kb on - strand, within ABZR87_RS00945 at 188.506 kb on - strand, within ABZR87_RS00945 at 188.506 kb on - strand, within ABZR87_RS00945 at 188.506 kb on - strand, within ABZR87_RS00945 at 188.506 kb on - strand, within ABZR87_RS00945 at 188.709 kb on + strand at 188.709 kb on + strand at 188.709 kb on + strand at 189.674 kb on + strand, within ABZR87_RS00955 at 189.674 kb on + strand, within ABZR87_RS00955 at 189.674 kb on + strand, within ABZR87_RS00955 at 189.675 kb on - strand, within ABZR87_RS00955 at 189.675 kb on - strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.774 kb on - strand, within ABZR87_RS00955 at 189.774 kb on - strand, within ABZR87_RS00955 at 189.774 kb on - strand, within ABZR87_RS00955 at 190.220 kb on + strand at 190.220 kb on + strand at 190.221 kb on - strand at 190.221 kb on - strand at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.513 kb on + strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 188,142 + ABZR87_RS00945 0.22 +0.7 188,142 + ABZR87_RS00945 0.22 +0.7 188,143 - ABZR87_RS00945 0.22 +0.5 188,143 - ABZR87_RS00945 0.22 +0.2 188,160 + ABZR87_RS00945 0.25 +0.3 188,322 + ABZR87_RS00945 0.50 +0.1 188,322 + ABZR87_RS00945 0.50 -2.5 188,322 + ABZR87_RS00945 0.50 +1.0 188,322 + ABZR87_RS00945 0.50 -0.0 188,322 + ABZR87_RS00945 0.50 -0.5 188,323 - ABZR87_RS00945 0.50 -0.2 188,323 - ABZR87_RS00945 0.50 +0.0 188,436 + ABZR87_RS00945 0.68 +0.6 188,436 + ABZR87_RS00945 0.68 -0.3 188,436 + ABZR87_RS00945 0.68 +0.7 188,460 + ABZR87_RS00945 0.72 +0.3 188,460 + ABZR87_RS00945 0.72 +0.3 188,461 - ABZR87_RS00945 0.72 +0.7 188,461 - ABZR87_RS00945 0.72 -1.7 188,502 + ABZR87_RS00945 0.78 +1.1 188,502 + ABZR87_RS00945 0.78 +0.3 188,502 + ABZR87_RS00945 0.78 +0.6 188,503 - ABZR87_RS00945 0.78 +2.9 188,505 + ABZR87_RS00945 0.79 -0.1 188,505 + ABZR87_RS00945 0.79 -1.2 188,505 + ABZR87_RS00945 0.79 -0.2 188,505 + ABZR87_RS00945 0.79 -2.4 188,505 + ABZR87_RS00945 0.79 -0.5 188,505 + ABZR87_RS00945 0.79 -0.6 188,506 - ABZR87_RS00945 0.79 +0.1 188,506 - ABZR87_RS00945 0.79 +0.3 188,506 - ABZR87_RS00945 0.79 +0.6 188,506 - ABZR87_RS00945 0.79 +0.8 188,506 - ABZR87_RS00945 0.79 -0.5 188,506 - ABZR87_RS00945 0.79 -3.7 188,709 + -2.1 188,709 + +0.7 188,709 + -1.2 189,674 + ABZR87_RS00955 0.20 +0.0 189,674 + ABZR87_RS00955 0.20 +1.8 189,674 + ABZR87_RS00955 0.20 +0.3 189,675 - ABZR87_RS00955 0.20 -2.6 189,675 - ABZR87_RS00955 0.20 +0.6 189,773 + ABZR87_RS00955 0.34 +0.2 189,773 + ABZR87_RS00955 0.34 +0.6 189,773 + ABZR87_RS00955 0.34 +2.2 189,773 + ABZR87_RS00955 0.34 -0.9 189,773 + ABZR87_RS00955 0.34 +2.8 189,773 + ABZR87_RS00955 0.34 -0.0 189,773 + ABZR87_RS00955 0.34 -1.2 189,774 - ABZR87_RS00955 0.34 -0.0 189,774 - ABZR87_RS00955 0.34 +1.0 189,774 - ABZR87_RS00955 0.34 +1.9 190,220 + -0.9 190,220 + -1.7 190,221 - +0.0 190,221 - -0.0 190,495 + ABZR87_RS00960 0.37 +1.6 190,495 + ABZR87_RS00960 0.37 +0.2 190,495 + ABZR87_RS00960 0.37 -0.5 190,495 + ABZR87_RS00960 0.37 +0.5 190,495 + ABZR87_RS00960 0.37 -0.1 190,495 + ABZR87_RS00960 0.37 -0.1 190,495 + ABZR87_RS00960 0.37 +0.6 190,495 + ABZR87_RS00960 0.37 +0.2 190,495 + ABZR87_RS00960 0.37 -1.1 190,495 + ABZR87_RS00960 0.37 -1.3 190,495 + ABZR87_RS00960 0.37 -0.4 190,496 - ABZR87_RS00960 0.37 -0.4 190,496 - ABZR87_RS00960 0.37 -1.1 190,496 - ABZR87_RS00960 0.37 +0.5 190,496 - ABZR87_RS00960 0.37 -1.0 190,496 - ABZR87_RS00960 0.37 -2.2 190,496 - ABZR87_RS00960 0.37 -0.4 190,513 + ABZR87_RS00960 0.39 +0.5 190,514 - ABZR87_RS00960 0.40 +0.1 190,514 - ABZR87_RS00960 0.40 -1.4 190,514 - ABZR87_RS00960 0.40 +0.1 190,514 - ABZR87_RS00960 0.40 +0.3
Or see this region's nucleotide sequence