Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00015

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00010 and ABZR87_RS00015 are separated by 2 nucleotidesABZR87_RS00015 and ABZR87_RS00020 are separated by 237 nucleotidesABZR87_RS00020 and ABZR87_RS00025 are separated by 39 nucleotides ABZR87_RS00010: ABZR87_RS00010 - translocation/assembly module TamB domain-containing protein, at 1,162 to 5,076 _RS00010 ABZR87_RS00015: ABZR87_RS00015 - autotransporter assembly complex family protein, at 5,079 to 6,866 _RS00015 ABZR87_RS00020: ABZR87_RS00020 - DUF3460 family protein, at 7,104 to 7,292 _RS00020 ABZR87_RS00025: ABZR87_RS00025 - ScpA family protein, at 7,332 to 8,213 _RS00025 Position (kb) 5 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4.107 kb on + strand, within ABZR87_RS00010at 4.317 kb on + strand, within ABZR87_RS00010at 4.317 kb on + strand, within ABZR87_RS00010at 4.318 kb on - strand, within ABZR87_RS00010at 4.701 kb on - strandat 4.701 kb on - strandat 4.701 kb on - strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.949 kb on - strandat 5.013 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.135 kb on - strandat 5.288 kb on - strand, within ABZR87_RS00015at 5.466 kb on + strand, within ABZR87_RS00015at 5.467 kb on - strand, within ABZR87_RS00015at 5.513 kb on + strand, within ABZR87_RS00015at 5.513 kb on + strand, within ABZR87_RS00015at 5.515 kb on + strand, within ABZR87_RS00015at 5.516 kb on - strand, within ABZR87_RS00015at 5.516 kb on - strand, within ABZR87_RS00015at 5.695 kb on + strand, within ABZR87_RS00015at 5.695 kb on + strand, within ABZR87_RS00015at 5.698 kb on + strand, within ABZR87_RS00015at 5.698 kb on + strand, within ABZR87_RS00015at 5.699 kb on - strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.764 kb on + strand, within ABZR87_RS00015at 5.764 kb on + strand, within ABZR87_RS00015at 5.765 kb on - strand, within ABZR87_RS00015at 5.812 kb on + strand, within ABZR87_RS00015at 5.820 kb on - strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.835 kb on - strand, within ABZR87_RS00015at 5.978 kb on - strand, within ABZR87_RS00015at 6.091 kb on + strand, within ABZR87_RS00015at 6.092 kb on - strand, within ABZR87_RS00015at 6.107 kb on + strand, within ABZR87_RS00015at 6.107 kb on + strand, within ABZR87_RS00015at 6.108 kb on - strand, within ABZR87_RS00015at 6.142 kb on + strand, within ABZR87_RS00015at 6.142 kb on + strand, within ABZR87_RS00015at 6.142 kb on + strand, within ABZR87_RS00015at 6.143 kb on - strand, within ABZR87_RS00015at 6.143 kb on - strand, within ABZR87_RS00015at 6.143 kb on - strand, within ABZR87_RS00015at 6.232 kb on + strand, within ABZR87_RS00015at 6.233 kb on - strand, within ABZR87_RS00015at 6.233 kb on - strand, within ABZR87_RS00015at 6.250 kb on + strand, within ABZR87_RS00015at 6.250 kb on + strand, within ABZR87_RS00015at 6.251 kb on - strand, within ABZR87_RS00015at 6.251 kb on - strand, within ABZR87_RS00015at 6.322 kb on + strand, within ABZR87_RS00015at 6.322 kb on + strand, within ABZR87_RS00015at 6.323 kb on - strand, within ABZR87_RS00015at 6.325 kb on + strand, within ABZR87_RS00015at 6.464 kb on + strand, within ABZR87_RS00015at 6.494 kb on + strand, within ABZR87_RS00015at 6.494 kb on + strand, within ABZR87_RS00015at 6.577 kb on + strand, within ABZR87_RS00015at 6.577 kb on + strand, within ABZR87_RS00015at 6.578 kb on - strand, within ABZR87_RS00015at 6.578 kb on - strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.670 kb on + strand, within ABZR87_RS00015at 6.740 kb on - strandat 6.740 kb on - strandat 6.811 kb on + strandat 6.812 kb on - strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.919 kb on - strandat 6.919 kb on - strandat 6.928 kb on + strandat 6.929 kb on - strandat 6.929 kb on - strandat 6.965 kb on + strandat 6.965 kb on + strandat 6.966 kb on - strandat 7.031 kb on + strandat 7.036 kb on + strandat 7.036 kb on + strandat 7.037 kb on - strandat 7.097 kb on + strandat 7.113 kb on + strandat 7.113 kb on + strandat 7.113 kb on + strandat 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.278 kb on + strandat 7.278 kb on + strandat 7.278 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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4,107 + ABZR87_RS00010 0.75 +1.0
4,317 + ABZR87_RS00010 0.81 -2.8
4,317 + ABZR87_RS00010 0.81 +1.4
4,318 - ABZR87_RS00010 0.81 +1.0
4,701 - +0.4
4,701 - -0.2
4,701 - +0.7
4,850 + -0.3
4,850 + -1.3
4,850 + +1.4
4,850 + +1.1
4,850 + +0.0
4,850 + +0.1
4,850 + -0.2
4,851 - +1.2
4,851 - -0.3
4,851 - -0.5
4,851 - +1.9
4,851 - +1.9
4,949 - +1.1
5,013 + +1.5
5,134 + +0.9
5,134 + -0.5
5,134 + +0.3
5,134 + +0.6
5,135 - +1.4
5,288 - ABZR87_RS00015 0.12 +0.1
5,466 + ABZR87_RS00015 0.22 +0.5
5,467 - ABZR87_RS00015 0.22 +0.9
5,513 + ABZR87_RS00015 0.24 +0.1
5,513 + ABZR87_RS00015 0.24 +1.1
5,515 + ABZR87_RS00015 0.24 -2.4
5,516 - ABZR87_RS00015 0.24 -0.4
5,516 - ABZR87_RS00015 0.24 -0.0
5,695 + ABZR87_RS00015 0.34 +1.2
5,695 + ABZR87_RS00015 0.34 -0.3
5,698 + ABZR87_RS00015 0.35 +0.9
5,698 + ABZR87_RS00015 0.35 +1.0
5,699 - ABZR87_RS00015 0.35 +0.7
5,725 + ABZR87_RS00015 0.36 +0.3
5,725 + ABZR87_RS00015 0.36 +2.2
5,725 + ABZR87_RS00015 0.36 +0.5
5,725 + ABZR87_RS00015 0.36 -0.6
5,725 + ABZR87_RS00015 0.36 +1.3
5,725 + ABZR87_RS00015 0.36 +0.5
5,725 + ABZR87_RS00015 0.36 +0.1
5,725 + ABZR87_RS00015 0.36 +1.1
5,725 + ABZR87_RS00015 0.36 +1.1
5,725 + ABZR87_RS00015 0.36 +1.1
5,725 + ABZR87_RS00015 0.36 +0.4
5,726 - ABZR87_RS00015 0.36 -2.9
5,726 - ABZR87_RS00015 0.36 -0.4
5,726 - ABZR87_RS00015 0.36 +1.5
5,726 - ABZR87_RS00015 0.36 +0.4
5,726 - ABZR87_RS00015 0.36 +0.5
5,726 - ABZR87_RS00015 0.36 +1.0
5,726 - ABZR87_RS00015 0.36 +2.0
5,726 - ABZR87_RS00015 0.36 +0.2
5,726 - ABZR87_RS00015 0.36 +0.7
5,726 - ABZR87_RS00015 0.36 +0.9
5,726 - ABZR87_RS00015 0.36 +0.2
5,764 + ABZR87_RS00015 0.38 -1.3
5,764 + ABZR87_RS00015 0.38 +0.2
5,765 - ABZR87_RS00015 0.38 -0.1
5,812 + ABZR87_RS00015 0.41 +1.1
5,820 - ABZR87_RS00015 0.41 +1.5
5,827 + ABZR87_RS00015 0.42 +1.9
5,827 + ABZR87_RS00015 0.42 +1.6
5,827 + ABZR87_RS00015 0.42 +0.6
5,827 + ABZR87_RS00015 0.42 +0.3
5,827 + ABZR87_RS00015 0.42 +0.9
5,828 - ABZR87_RS00015 0.42 -1.5
5,828 - ABZR87_RS00015 0.42 +0.5
5,828 - ABZR87_RS00015 0.42 +1.0
5,828 - ABZR87_RS00015 0.42 +1.1
5,835 - ABZR87_RS00015 0.42 +0.8
5,978 - ABZR87_RS00015 0.50 +0.3
6,091 + ABZR87_RS00015 0.57 +1.1
6,092 - ABZR87_RS00015 0.57 +2.1
6,107 + ABZR87_RS00015 0.57 +1.0
6,107 + ABZR87_RS00015 0.57 -0.2
6,108 - ABZR87_RS00015 0.58 -0.4
6,142 + ABZR87_RS00015 0.59 +1.6
6,142 + ABZR87_RS00015 0.59 +1.1
6,142 + ABZR87_RS00015 0.59 -0.2
6,143 - ABZR87_RS00015 0.60 +0.2
6,143 - ABZR87_RS00015 0.60 +2.8
6,143 - ABZR87_RS00015 0.60 -0.7
6,232 + ABZR87_RS00015 0.64 -0.8
6,233 - ABZR87_RS00015 0.65 +1.9
6,233 - ABZR87_RS00015 0.65 -0.1
6,250 + ABZR87_RS00015 0.65 +0.5
6,250 + ABZR87_RS00015 0.65 +0.4
6,251 - ABZR87_RS00015 0.66 -0.3
6,251 - ABZR87_RS00015 0.66 +1.1
6,322 + ABZR87_RS00015 0.70 +0.0
6,322 + ABZR87_RS00015 0.70 +2.1
6,323 - ABZR87_RS00015 0.70 +0.8
6,325 + ABZR87_RS00015 0.70 +0.1
6,464 + ABZR87_RS00015 0.77 +0.0
6,494 + ABZR87_RS00015 0.79 +1.7
6,494 + ABZR87_RS00015 0.79 +0.1
6,577 + ABZR87_RS00015 0.84 -1.3
6,577 + ABZR87_RS00015 0.84 +0.0
6,578 - ABZR87_RS00015 0.84 +1.0
6,578 - ABZR87_RS00015 0.84 -0.4
6,631 + ABZR87_RS00015 0.87 +0.8
6,631 + ABZR87_RS00015 0.87 +0.8
6,631 + ABZR87_RS00015 0.87 +2.6
6,631 + ABZR87_RS00015 0.87 +2.4
6,631 + ABZR87_RS00015 0.87 +1.4
6,632 - ABZR87_RS00015 0.87 +1.3
6,632 - ABZR87_RS00015 0.87 +1.4
6,632 - ABZR87_RS00015 0.87 +0.5
6,632 - ABZR87_RS00015 0.87 -0.5
6,632 - ABZR87_RS00015 0.87 +0.9
6,632 - ABZR87_RS00015 0.87 +1.5
6,632 - ABZR87_RS00015 0.87 +0.2
6,670 + ABZR87_RS00015 0.89 +0.7
6,740 - +0.7
6,740 - +1.8
6,811 + -0.1
6,812 - -0.5
6,918 + +1.1
6,918 + +0.7
6,918 + +1.1
6,918 + -0.0
6,919 - -0.0
6,919 - +0.2
6,928 + -3.3
6,929 - +0.8
6,929 - +0.6
6,965 + +0.8
6,965 + -0.9
6,966 - +0.1
7,031 + +0.7
7,036 + +1.2
7,036 + +1.4
7,037 - +0.2
7,097 + -2.6
7,113 + -0.9
7,113 + -0.3
7,113 + -1.0
7,272 + ABZR87_RS00020 0.89 -0.9
7,272 + ABZR87_RS00020 0.89 -0.7
7,272 + ABZR87_RS00020 0.89 -0.3
7,272 + ABZR87_RS00020 0.89 -0.2
7,272 + ABZR87_RS00020 0.89 +0.8
7,278 + +0.3
7,278 + -1.5
7,278 + +0.7

Or see this region's nucleotide sequence