Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0926

Experiment: Formate/Acetate-Sulfite (60/30-60 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfbA and DVU0926 are separated by 269 nucleotidesDVU0926 and rplU are separated by 116 nucleotidesrplU and rpmA are separated by 20 nucleotidesrpmA and obg are separated by 148 nucleotides DVU0925: rfbA - glucose-1-phosphate thymidylyltransferase (TIGR), at 1,016,369 to 1,017,277 rfbA DVU0926: DVU0926 - hypothetical protein (TIGR), at 1,017,547 to 1,017,738 DVU0926 DVU0927: rplU - ribosomal protein L21 (TIGR), at 1,017,855 to 1,018,163 rplU DVU0928: rpmA - ribosomal protein L27 (TIGR), at 1,018,184 to 1,018,447 rpmA DVU0929: obg - GTP-binding protein, GTP1/OBG family (TIGR), at 1,018,596 to 1,019,696 obg Position (kb) 1017 1018Strain fitness (log2 ratio) -1 0 1 2at 1017.357 kb on + strandat 1017.375 kb on - strandat 1017.399 kb on + strandat 1017.407 kb on - strandat 1017.432 kb on + strandat 1017.439 kb on - strandat 1017.570 kb on + strand, within DVU0926at 1017.588 kb on - strand, within DVU0926at 1017.658 kb on - strand, within DVU0926at 1017.688 kb on + strand, within DVU0926at 1017.704 kb on + strand, within DVU0926at 1017.752 kb on - strandat 1017.752 kb on - strandat 1017.752 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) + 0.1% Yeast Extract
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1,017,357 + +2.2
1,017,375 - +0.1
1,017,399 + -0.1
1,017,407 - +0.0
1,017,432 + +0.5
1,017,439 - +0.5
1,017,570 + DVU0926 0.12 -1.4
1,017,588 - DVU0926 0.21 -1.5
1,017,658 - DVU0926 0.58 -0.1
1,017,688 + DVU0926 0.73 -0.4
1,017,704 + DVU0926 0.82 -1.5
1,017,752 - -0.0
1,017,752 - -1.5
1,017,752 - -0.6

Or see this region's nucleotide sequence