Strain Fitness in Sinorhizobium meliloti 1021 around SMc01564

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01563 and SMc01564 are separated by 432 nucleotidesSMc01564 and SMc01565 are separated by 23 nucleotides SMc01563: SMc01563 - RNA polymerase sigma factor RpoD, at 2,501,869 to 2,503,923 SMc01563 SMc01564: SMc01564 - L-threonine 3-dehydrogenase, at 2,504,356 to 2,505,390 SMc01564 SMc01565: SMc01565 - 2-amino-3-ketobutyrate CoA ligase, at 2,505,414 to 2,506,601 SMc01565 Position (kb) 2504 2505 2506Strain fitness (log2 ratio) -1 0 1 2at 2504.133 kb on - strandat 2504.133 kb on - strandat 2504.212 kb on - strandat 2504.253 kb on + strandat 2504.274 kb on + strandat 2504.274 kb on + strandat 2504.275 kb on - strandat 2504.357 kb on + strandat 2504.492 kb on + strand, within SMc01564at 2504.492 kb on + strand, within SMc01564at 2504.519 kb on + strand, within SMc01564at 2504.519 kb on + strand, within SMc01564at 2504.519 kb on + strand, within SMc01564at 2504.520 kb on - strand, within SMc01564at 2504.520 kb on - strand, within SMc01564at 2504.520 kb on - strand, within SMc01564at 2504.988 kb on + strand, within SMc01564at 2504.988 kb on + strand, within SMc01564at 2504.989 kb on - strand, within SMc01564at 2504.989 kb on - strand, within SMc01564at 2504.989 kb on - strand, within SMc01564at 2504.989 kb on - strand, within SMc01564at 2504.989 kb on - strand, within SMc01564at 2504.989 kb on - strand, within SMc01564at 2504.989 kb on - strand, within SMc01564at 2504.989 kb on - strand, within SMc01564at 2504.990 kb on + strand, within SMc01564at 2504.990 kb on + strand, within SMc01564at 2505.346 kb on + strandat 2505.347 kb on - strandat 2505.347 kb on - strandat 2505.347 kb on - strandat 2505.415 kb on + strandat 2505.415 kb on + strandat 2505.415 kb on + strandat 2505.416 kb on - strandat 2505.556 kb on + strand, within SMc01565at 2505.557 kb on - strand, within SMc01565at 2505.796 kb on + strand, within SMc01565at 2505.848 kb on + strand, within SMc01565at 2505.848 kb on + strand, within SMc01565at 2505.848 kb on + strand, within SMc01565at 2506.279 kb on + strand, within SMc01565at 2506.280 kb on - strand, within SMc01565at 2506.280 kb on - strand, within SMc01565at 2506.314 kb on + strand, within SMc01565at 2506.314 kb on + strand, within SMc01565at 2506.314 kb on + strand, within SMc01565at 2506.381 kb on + strand, within SMc01565at 2506.388 kb on - strand, within SMc01565

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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2,504,133 - +0.3
2,504,133 - +0.3
2,504,212 - +0.5
2,504,253 + -0.7
2,504,274 + -0.6
2,504,274 + +1.9
2,504,275 - +0.8
2,504,357 + +0.5
2,504,492 + SMc01564 0.13 -0.2
2,504,492 + SMc01564 0.13 -0.3
2,504,519 + SMc01564 0.16 -0.7
2,504,519 + SMc01564 0.16 +0.9
2,504,519 + SMc01564 0.16 +1.3
2,504,520 - SMc01564 0.16 +0.4
2,504,520 - SMc01564 0.16 +1.2
2,504,520 - SMc01564 0.16 +0.4
2,504,988 + SMc01564 0.61 +0.4
2,504,988 + SMc01564 0.61 +0.7
2,504,989 - SMc01564 0.61 -0.7
2,504,989 - SMc01564 0.61 +0.3
2,504,989 - SMc01564 0.61 +0.6
2,504,989 - SMc01564 0.61 -0.9
2,504,989 - SMc01564 0.61 -0.1
2,504,989 - SMc01564 0.61 +2.0
2,504,989 - SMc01564 0.61 +0.3
2,504,989 - SMc01564 0.61 +0.5
2,504,990 + SMc01564 0.61 -0.1
2,504,990 + SMc01564 0.61 -0.3
2,505,346 + +0.1
2,505,347 - -0.0
2,505,347 - +0.9
2,505,347 - +0.2
2,505,415 + -1.6
2,505,415 + +1.0
2,505,415 + +0.3
2,505,416 - +0.3
2,505,556 + SMc01565 0.12 +0.2
2,505,557 - SMc01565 0.12 -0.6
2,505,796 + SMc01565 0.32 -0.6
2,505,848 + SMc01565 0.37 +0.6
2,505,848 + SMc01565 0.37 -1.2
2,505,848 + SMc01565 0.37 -0.5
2,506,279 + SMc01565 0.73 +0.0
2,506,280 - SMc01565 0.73 +0.1
2,506,280 - SMc01565 0.73 -0.4
2,506,314 + SMc01565 0.76 +0.2
2,506,314 + SMc01565 0.76 +0.9
2,506,314 + SMc01565 0.76 +0.3
2,506,381 + SMc01565 0.81 -0.2
2,506,388 - SMc01565 0.82 +0.2

Or see this region's nucleotide sequence