Strain Fitness in Sinorhizobium meliloti 1021 around SMc01363

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01364 and SMc01363 are separated by 191 nucleotidesSMc01363 and SMc01362 overlap by 1 nucleotidesSMc01362 and SMc01361 are separated by 29 nucleotides SMc01364: SMc01364 - DNA topoisomerase I, at 1,416,997 to 1,419,699 SMc01364 SMc01363: SMc01363 - hypothetical protein, at 1,419,891 to 1,421,042 SMc01363 SMc01362: SMc01362 - glycerol-3-phosphate acyltransferase PlsY, at 1,421,042 to 1,421,653 SMc01362 SMc01361: SMc01361 - dihydroorotase, at 1,421,683 to 1,422,975 SMc01361 Position (kb) 1419 1420 1421 1422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1419.781 kb on + strandat 1419.781 kb on + strandat 1419.782 kb on - strandat 1419.782 kb on - strandat 1419.785 kb on + strandat 1419.785 kb on + strandat 1419.785 kb on + strandat 1419.785 kb on + strandat 1419.785 kb on + strandat 1419.786 kb on - strandat 1419.786 kb on - strandat 1419.786 kb on - strandat 1419.786 kb on - strandat 1419.787 kb on + strandat 1419.788 kb on - strandat 1419.912 kb on + strandat 1419.912 kb on + strandat 1419.971 kb on + strandat 1419.971 kb on + strandat 1419.971 kb on + strandat 1419.972 kb on - strandat 1419.972 kb on - strandat 1419.998 kb on + strandat 1419.999 kb on - strandat 1419.999 kb on - strandat 1419.999 kb on - strandat 1420.294 kb on + strand, within SMc01363at 1421.715 kb on - strandat 1421.715 kb on - strandat 1421.923 kb on + strand, within SMc01361at 1421.924 kb on - strand, within SMc01361at 1421.939 kb on + strand, within SMc01361

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,419,781 + +0.4
1,419,781 + +0.3
1,419,782 - +0.9
1,419,782 - +0.5
1,419,785 + +0.5
1,419,785 + +0.7
1,419,785 + +0.1
1,419,785 + -1.2
1,419,785 + -0.1
1,419,786 - +0.0
1,419,786 - +2.3
1,419,786 - -0.6
1,419,786 - +0.4
1,419,787 + -1.5
1,419,788 - +0.1
1,419,912 + +0.5
1,419,912 + +0.7
1,419,971 + +0.3
1,419,971 + -0.2
1,419,971 + +0.5
1,419,972 - +1.1
1,419,972 - -0.1
1,419,998 + +0.1
1,419,999 - +1.0
1,419,999 - -0.0
1,419,999 - -0.2
1,420,294 + SMc01363 0.35 +0.3
1,421,715 - -2.3
1,421,715 - -1.9
1,421,923 + SMc01361 0.19 +1.1
1,421,924 - SMc01361 0.19 -4.3
1,421,939 + SMc01361 0.20 +0.1

Or see this region's nucleotide sequence