Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00654 and SMc00653 are separated by 374 nucleotides SMc00653 and SMc00652 are separated by 242 nucleotides SMc00652 and SMc00651 are separated by 364 nucleotides
SMc00654: SMc00654 - response regulator,controls chromosomal replication initiation protein, at 2,922,080 to 2,922,781
SMc00654
SMc00653: SMc00653 - 2-component receiver domain-containing protein, at 2,923,156 to 2,923,524
SMc00653
SMc00652: SMc00652 - hypothetical protein, at 2,923,767 to 2,924,432
SMc00652
SMc00651: SMc00651 - hypothetical protein, at 2,924,797 to 2,925,399
SMc00651
Position (kb)
2923
2924
2925 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2922.900 kb on + strand at 2922.901 kb on - strand at 2922.914 kb on + strand at 2922.914 kb on + strand at 2922.914 kb on + strand at 2922.915 kb on - strand at 2922.915 kb on - strand at 2922.915 kb on - strand at 2923.286 kb on + strand, within SMc00653 at 2923.287 kb on - strand, within SMc00653 at 2923.287 kb on - strand, within SMc00653 at 2923.289 kb on + strand, within SMc00653 at 2923.289 kb on + strand, within SMc00653 at 2923.289 kb on + strand, within SMc00653 at 2923.290 kb on - strand, within SMc00653 at 2923.290 kb on - strand, within SMc00653 at 2923.327 kb on - strand, within SMc00653 at 2923.476 kb on + strand, within SMc00653 at 2923.476 kb on + strand, within SMc00653 at 2923.573 kb on - strand at 2923.573 kb on - strand at 2923.573 kb on - strand at 2923.791 kb on + strand at 2924.520 kb on - strand at 2924.548 kb on - strand at 2924.592 kb on + strand at 2924.675 kb on + strand at 2924.675 kb on + strand at 2924.675 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,922,900 + +0.1 2,922,901 - +1.6 2,922,914 + +0.4 2,922,914 + +0.5 2,922,914 + -4.8 2,922,915 - -0.2 2,922,915 - -0.3 2,922,915 - +0.7 2,923,286 + SMc00653 0.35 +0.3 2,923,287 - SMc00653 0.36 +0.1 2,923,287 - SMc00653 0.36 +0.9 2,923,289 + SMc00653 0.36 +0.1 2,923,289 + SMc00653 0.36 +0.6 2,923,289 + SMc00653 0.36 +1.5 2,923,290 - SMc00653 0.36 +0.3 2,923,290 - SMc00653 0.36 -0.3 2,923,327 - SMc00653 0.46 -0.5 2,923,476 + SMc00653 0.87 +0.7 2,923,476 + SMc00653 0.87 +0.5 2,923,573 - +0.4 2,923,573 - +0.1 2,923,573 - +0.4 2,923,791 + +1.1 2,924,520 - +0.5 2,924,548 - -3.1 2,924,592 + -0.3 2,924,675 + +0.3 2,924,675 + -0.1 2,924,675 + -0.1
Or see this region's nucleotide sequence