Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00367 and SMc00368 are separated by 165 nucleotides SMc00368 and SMc00369 are separated by 17 nucleotides SMc00369 and SMc00370 are separated by 180 nucleotides
SMc00367: SMc00367 - hypothetical protein, at 323,158 to 323,517
SMc00367
SMc00368: SMc00368 - oxidoreductase, at 323,683 to 324,441
SMc00368
SMc00369: SMc00369 - oxidoreductase, at 324,459 to 324,662
SMc00369
SMc00370: SMc00370 - transcriptional regulator, at 324,843 to 325,733
SMc00370
Position (kb) 324
325 Strain fitness (log2 ratio) -1
0
1
2
3 at 323.477 kb on + strand, within SMc00367 at 323.477 kb on + strand, within SMc00367 at 323.478 kb on - strand, within SMc00367 at 323.478 kb on - strand, within SMc00367 at 323.478 kb on - strand, within SMc00367 at 323.478 kb on - strand, within SMc00367 at 323.478 kb on - strand, within SMc00367 at 323.607 kb on + strand at 323.607 kb on + strand at 323.611 kb on + strand at 323.611 kb on + strand at 323.612 kb on - strand at 323.612 kb on - strand at 323.612 kb on - strand at 323.829 kb on + strand, within SMc00368 at 323.886 kb on + strand, within SMc00368 at 324.125 kb on + strand, within SMc00368 at 324.291 kb on - strand, within SMc00368 at 324.291 kb on - strand, within SMc00368 at 324.293 kb on + strand, within SMc00368 at 324.293 kb on + strand, within SMc00368 at 324.293 kb on + strand, within SMc00368 at 324.293 kb on + strand, within SMc00368 at 324.294 kb on - strand, within SMc00368 at 324.294 kb on - strand, within SMc00368 at 324.294 kb on - strand, within SMc00368 at 324.513 kb on - strand, within SMc00369 at 324.693 kb on + strand at 324.728 kb on + strand at 324.778 kb on + strand at 325.263 kb on + strand, within SMc00370 at 325.263 kb on + strand, within SMc00370 at 325.276 kb on + strand, within SMc00370 at 325.277 kb on - strand, within SMc00370 at 325.447 kb on + strand, within SMc00370 at 325.447 kb on + strand, within SMc00370 at 325.447 kb on + strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.449 kb on + strand, within SMc00370 at 325.450 kb on - strand, within SMc00370 at 325.566 kb on + strand, within SMc00370 at 325.566 kb on + strand, within SMc00370 at 325.566 kb on + strand, within SMc00370 at 325.567 kb on - strand, within SMc00370 at 325.593 kb on + strand, within SMc00370 at 325.594 kb on - strand, within SMc00370
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 323,477 + SMc00367 0.89 -1.7 323,477 + SMc00367 0.89 -0.5 323,478 - SMc00367 0.89 +1.6 323,478 - SMc00367 0.89 +0.3 323,478 - SMc00367 0.89 +1.0 323,478 - SMc00367 0.89 +0.4 323,478 - SMc00367 0.89 +0.7 323,607 + -0.2 323,607 + +1.2 323,611 + +0.7 323,611 + +0.4 323,612 - -0.7 323,612 - +0.0 323,612 - -0.1 323,829 + SMc00368 0.19 -0.0 323,886 + SMc00368 0.27 +0.4 324,125 + SMc00368 0.58 +1.1 324,291 - SMc00368 0.80 -0.3 324,291 - SMc00368 0.80 +0.6 324,293 + SMc00368 0.80 +1.3 324,293 + SMc00368 0.80 +0.1 324,293 + SMc00368 0.80 +0.2 324,293 + SMc00368 0.80 -0.1 324,294 - SMc00368 0.81 -0.4 324,294 - SMc00368 0.81 -0.1 324,294 - SMc00368 0.81 -0.2 324,513 - SMc00369 0.26 -1.0 324,693 + +0.6 324,728 + -0.4 324,778 + -0.2 325,263 + SMc00370 0.47 -0.8 325,263 + SMc00370 0.47 +0.0 325,276 + SMc00370 0.49 +0.4 325,277 - SMc00370 0.49 -0.2 325,447 + SMc00370 0.68 -0.1 325,447 + SMc00370 0.68 +0.2 325,447 + SMc00370 0.68 -0.3 325,448 - SMc00370 0.68 -0.3 325,448 - SMc00370 0.68 +1.1 325,448 - SMc00370 0.68 +2.8 325,448 - SMc00370 0.68 +0.1 325,448 - SMc00370 0.68 -0.7 325,448 - SMc00370 0.68 -0.2 325,448 - SMc00370 0.68 -0.4 325,449 + SMc00370 0.68 -0.4 325,450 - SMc00370 0.68 +0.3 325,566 + SMc00370 0.81 -0.7 325,566 + SMc00370 0.81 -0.0 325,566 + SMc00370 0.81 +0.0 325,567 - SMc00370 0.81 -0.8 325,593 + SMc00370 0.84 -0.3 325,594 - SMc00370 0.84 -0.0
Or see this region's nucleotide sequence