Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5020 and SMa0421 overlap by 13 nucleotides SMa0421 and SMa5021 overlap by 4 nucleotides SMa5021 and SMa0424 are separated by 34 nucleotides
SMa5020: SMa5020 - hypothetical protein, at 227,425 to 228,318
SMa5020
SMa0421: SMa0421 - hypothetical protein, at 228,306 to 228,824
SMa0421
SMa5021: SMa5021 - hypothetical protein, at 228,821 to 229,255
SMa5021
SMa0424: SMa0424 - ATP-dependent DNA ligase, at 229,290 to 230,330
SMa0424
Position (kb) 228
229
230 Strain fitness (log2 ratio) -1
0
1
2 at 227.975 kb on - strand, within SMa5020 at 228.094 kb on + strand, within SMa5020 at 228.112 kb on - strand, within SMa5020 at 228.121 kb on + strand, within SMa5020 at 228.122 kb on - strand, within SMa5020 at 228.122 kb on - strand, within SMa5020 at 228.612 kb on + strand, within SMa0421 at 228.699 kb on + strand, within SMa0421 at 228.699 kb on + strand, within SMa0421 at 228.700 kb on - strand, within SMa0421 at 228.700 kb on - strand, within SMa0421 at 228.789 kb on + strand at 228.790 kb on - strand at 228.848 kb on + strand at 228.849 kb on - strand at 228.849 kb on - strand at 228.973 kb on - strand, within SMa5021 at 228.991 kb on - strand, within SMa5021 at 229.042 kb on + strand, within SMa5021 at 229.042 kb on + strand, within SMa5021 at 229.208 kb on + strand, within SMa5021 at 229.210 kb on + strand, within SMa5021 at 229.223 kb on - strand at 229.357 kb on + strand at 229.357 kb on + strand at 229.469 kb on + strand, within SMa0424 at 229.469 kb on + strand, within SMa0424 at 229.470 kb on - strand, within SMa0424 at 229.520 kb on + strand, within SMa0424 at 229.524 kb on - strand, within SMa0424 at 229.662 kb on + strand, within SMa0424 at 229.882 kb on + strand, within SMa0424
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 227,975 - SMa5020 0.62 +0.5 228,094 + SMa5020 0.75 -0.4 228,112 - SMa5020 0.77 -0.8 228,121 + SMa5020 0.78 +0.5 228,122 - SMa5020 0.78 +0.5 228,122 - SMa5020 0.78 +1.0 228,612 + SMa0421 0.59 -0.1 228,699 + SMa0421 0.76 +0.3 228,699 + SMa0421 0.76 -0.0 228,700 - SMa0421 0.76 -0.2 228,700 - SMa0421 0.76 -0.1 228,789 + -0.7 228,790 - +0.3 228,848 + -0.1 228,849 - -1.2 228,849 - -1.1 228,973 - SMa5021 0.35 +0.1 228,991 - SMa5021 0.39 +0.7 229,042 + SMa5021 0.51 -0.5 229,042 + SMa5021 0.51 +0.6 229,208 + SMa5021 0.89 -0.4 229,210 + SMa5021 0.89 +1.6 229,223 - +2.2 229,357 + -0.0 229,357 + -0.1 229,469 + SMa0424 0.17 +0.4 229,469 + SMa0424 0.17 -1.1 229,470 - SMa0424 0.17 -0.9 229,520 + SMa0424 0.22 -0.9 229,524 - SMa0424 0.22 +0.7 229,662 + SMa0424 0.36 +0.1 229,882 + SMa0424 0.57 +1.0
Or see this region's nucleotide sequence