Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1158 and SMa1159 are separated by 180 nucleotides SMa1159 and SMa1160 overlap by 53 nucleotides SMa1160 and SMa1161 overlap by 4 nucleotides SMa1161 and SMa1162 are separated by 151 nucleotides
SMa1158: SMa1158 - hypothetical protein, at 634,156 to 634,998
SMa1158
SMa1159: SMa1159 - hypothetical protein, at 635,179 to 635,622
SMa1159
SMa1160: SMa1160 - hypothetical protein, at 635,570 to 636,151
SMa1160
SMa1161: SMa1161 - hypothetical protein, at 636,148 to 636,429
SMa1161
SMa1162: SMa1162 - hypothetical protein, at 636,581 to 637,258
SMa1162
Position (kb) 635
636
637 Strain fitness (log2 ratio) -1
0
1
2
3 at 634.688 kb on - strand, within SMa1158 at 634.879 kb on - strand, within SMa1158 at 634.914 kb on + strand at 634.920 kb on - strand at 634.976 kb on - strand at 634.976 kb on - strand at 634.976 kb on - strand at 635.058 kb on - strand at 635.234 kb on - strand, within SMa1159 at 635.236 kb on - strand, within SMa1159 at 635.260 kb on + strand, within SMa1159 at 635.261 kb on - strand, within SMa1159 at 635.311 kb on + strand, within SMa1159 at 635.323 kb on + strand, within SMa1159 at 635.431 kb on + strand, within SMa1159 at 635.431 kb on + strand, within SMa1159 at 635.432 kb on - strand, within SMa1159 at 635.437 kb on - strand, within SMa1159 at 635.437 kb on - strand, within SMa1159 at 635.437 kb on - strand, within SMa1159 at 635.449 kb on - strand, within SMa1159 at 635.491 kb on + strand, within SMa1159 at 635.571 kb on + strand at 635.572 kb on - strand at 635.687 kb on + strand, within SMa1160 at 635.856 kb on + strand, within SMa1160 at 635.856 kb on + strand, within SMa1160 at 635.915 kb on - strand, within SMa1160 at 635.915 kb on - strand, within SMa1160 at 636.037 kb on + strand, within SMa1160 at 636.097 kb on - strand at 636.243 kb on + strand, within SMa1161 at 636.243 kb on + strand, within SMa1161 at 636.243 kb on + strand, within SMa1161 at 636.243 kb on + strand, within SMa1161 at 636.281 kb on - strand, within SMa1161 at 636.309 kb on - strand, within SMa1161 at 636.309 kb on - strand, within SMa1161 at 636.418 kb on - strand at 636.601 kb on + strand at 636.645 kb on - strand at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.832 kb on - strand, within SMa1162 at 636.836 kb on + strand, within SMa1162 at 636.837 kb on - strand, within SMa1162 at 636.837 kb on - strand, within SMa1162 at 636.933 kb on - strand, within SMa1162 at 637.147 kb on + strand, within SMa1162 at 637.147 kb on + strand, within SMa1162
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 634,688 - SMa1158 0.63 -1.2 634,879 - SMa1158 0.86 +0.8 634,914 + -0.0 634,920 - -0.0 634,976 - +0.4 634,976 - +1.0 634,976 - +0.1 635,058 - +0.3 635,234 - SMa1159 0.12 -0.4 635,236 - SMa1159 0.13 +0.5 635,260 + SMa1159 0.18 +0.2 635,261 - SMa1159 0.18 +0.2 635,311 + SMa1159 0.30 +0.1 635,323 + SMa1159 0.32 +0.2 635,431 + SMa1159 0.57 +0.9 635,431 + SMa1159 0.57 +0.1 635,432 - SMa1159 0.57 -0.3 635,437 - SMa1159 0.58 +0.3 635,437 - SMa1159 0.58 +0.5 635,437 - SMa1159 0.58 -0.5 635,449 - SMa1159 0.61 +3.2 635,491 + SMa1159 0.70 +0.9 635,571 + +0.3 635,572 - +0.3 635,687 + SMa1160 0.20 +0.9 635,856 + SMa1160 0.49 -0.2 635,856 + SMa1160 0.49 +0.9 635,915 - SMa1160 0.59 +0.2 635,915 - SMa1160 0.59 +1.0 636,037 + SMa1160 0.80 +0.3 636,097 - -0.6 636,243 + SMa1161 0.34 -0.2 636,243 + SMa1161 0.34 +0.7 636,243 + SMa1161 0.34 +0.4 636,243 + SMa1161 0.34 +0.7 636,281 - SMa1161 0.47 +0.5 636,309 - SMa1161 0.57 +2.3 636,309 - SMa1161 0.57 +2.5 636,418 - -0.3 636,601 + -0.2 636,645 - +0.2 636,831 + SMa1162 0.37 +0.6 636,831 + SMa1162 0.37 +0.4 636,831 + SMa1162 0.37 +0.2 636,831 + SMa1162 0.37 +0.2 636,831 + SMa1162 0.37 +0.6 636,831 + SMa1162 0.37 +0.1 636,831 + SMa1162 0.37 +0.9 636,832 - SMa1162 0.37 +0.6 636,836 + SMa1162 0.38 +0.2 636,837 - SMa1162 0.38 +0.2 636,837 - SMa1162 0.38 +0.2 636,933 - SMa1162 0.52 +1.3 637,147 + SMa1162 0.83 +0.6 637,147 + SMa1162 0.83 -0.0
Or see this region's nucleotide sequence