Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0878 and SMa0882 are separated by 673 nucleotides SMa0882 and SMa0883 are separated by 24 nucleotides SMa0883 and SMa0886 are separated by 132 nucleotides
SMa0878: SMa0878 - glucosamine--fructose-6-phosphate aminotransferase, at 490,023 to 491,849
SMa0878
SMa0882: SMa0882 - hypothetical protein, at 492,523 to 493,113
SMa0882
SMa0883: SMa0883 - hypothetical protein, at 493,138 to 493,668
SMa0883
SMa0886: SMa0886 - hypothetical protein, at 493,801 to 494,535
SMa0886
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 491.831 kb on + strand at 491.868 kb on + strand at 491.869 kb on - strand at 491.869 kb on - strand at 491.880 kb on + strand at 491.880 kb on + strand at 491.881 kb on - strand at 491.925 kb on - strand at 491.958 kb on - strand at 491.958 kb on - strand at 491.965 kb on + strand at 491.966 kb on - strand at 491.987 kb on + strand at 492.012 kb on + strand at 492.028 kb on + strand at 492.132 kb on + strand at 492.160 kb on + strand at 492.280 kb on - strand at 492.280 kb on - strand at 492.344 kb on + strand at 492.345 kb on - strand at 492.345 kb on - strand at 492.357 kb on + strand at 492.363 kb on + strand at 492.415 kb on + strand at 492.538 kb on + strand at 492.538 kb on + strand at 492.545 kb on - strand at 492.819 kb on - strand, within SMa0882 at 492.882 kb on + strand, within SMa0882 at 493.171 kb on - strand at 493.171 kb on - strand at 493.229 kb on + strand, within SMa0883 at 493.230 kb on - strand, within SMa0883 at 493.230 kb on - strand, within SMa0883 at 493.421 kb on - strand, within SMa0883 at 493.468 kb on + strand, within SMa0883 at 493.862 kb on + strand at 494.063 kb on + strand, within SMa0886 at 494.064 kb on - strand, within SMa0886
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 491,831 + -0.1 491,868 + -1.4 491,869 - +0.3 491,869 - -0.2 491,880 + -0.4 491,880 + -0.5 491,881 - -0.4 491,925 - +0.7 491,958 - -0.5 491,958 - -0.6 491,965 + +1.3 491,966 - +0.7 491,987 + +0.5 492,012 + +0.3 492,028 + -0.0 492,132 + -0.3 492,160 + -1.2 492,280 - -1.4 492,280 - -0.1 492,344 + -0.0 492,345 - -3.0 492,345 - -0.5 492,357 + +0.4 492,363 + -1.1 492,415 + -0.6 492,538 + +0.1 492,538 + +4.1 492,545 - -0.0 492,819 - SMa0882 0.50 +0.3 492,882 + SMa0882 0.61 +0.5 493,171 - +0.6 493,171 - -0.6 493,229 + SMa0883 0.17 -1.1 493,230 - SMa0883 0.17 -0.4 493,230 - SMa0883 0.17 +0.1 493,421 - SMa0883 0.53 -0.3 493,468 + SMa0883 0.62 -0.5 493,862 + -0.1 494,063 + SMa0886 0.36 -3.2 494,064 - SMa0886 0.36 -0.7
Or see this region's nucleotide sequence