Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0747 and SMa0748 are separated by 369 nucleotides SMa0748 and SMa5003 are separated by 232 nucleotides SMa5003 and SMa0750 are separated by 70 nucleotides
SMa0747: SMa0747 - hypothetical protein, at 401,607 to 401,768
SMa0747
SMa0748: SMa0748 - MucR family transcriptional regulator, at 402,138 to 402,587
SMa0748
SMa5003: SMa5003 - hypothetical protein, at 402,820 to 403,107
SMa5003
SMa0750: SMa0750 - LysR family transcriptional regulator, at 403,178 to 404,056
SMa0750
Position (kb) 402
403 Strain fitness (log2 ratio) -2
-1
0
1 at 401.151 kb on - strand at 401.151 kb on - strand at 401.151 kb on - strand at 401.232 kb on + strand at 401.232 kb on + strand at 401.233 kb on - strand at 401.256 kb on + strand at 401.297 kb on + strand at 401.553 kb on + strand at 401.764 kb on + strand at 401.764 kb on + strand at 401.764 kb on + strand at 401.764 kb on + strand at 401.941 kb on - strand at 401.957 kb on - strand at 402.041 kb on + strand at 402.042 kb on - strand at 402.059 kb on + strand at 402.059 kb on + strand at 402.084 kb on + strand at 402.163 kb on + strand at 402.164 kb on - strand at 402.199 kb on - strand, within SMa0748 at 402.479 kb on - strand, within SMa0748 at 402.490 kb on - strand, within SMa0748 at 402.626 kb on + strand at 402.644 kb on - strand at 402.704 kb on - strand at 402.704 kb on - strand at 402.704 kb on - strand at 402.757 kb on - strand at 402.821 kb on + strand at 402.857 kb on + strand, within SMa5003 at 402.911 kb on + strand, within SMa5003 at 402.911 kb on + strand, within SMa5003 at 402.911 kb on + strand, within SMa5003 at 402.911 kb on + strand, within SMa5003 at 402.912 kb on - strand, within SMa5003 at 402.912 kb on - strand, within SMa5003 at 402.924 kb on - strand, within SMa5003 at 402.971 kb on + strand, within SMa5003 at 402.973 kb on + strand, within SMa5003 at 402.973 kb on + strand, within SMa5003 at 402.985 kb on + strand, within SMa5003 at 403.048 kb on - strand, within SMa5003 at 403.180 kb on - strand at 403.383 kb on + strand, within SMa0750 at 403.383 kb on + strand, within SMa0750 at 403.384 kb on - strand, within SMa0750 at 403.384 kb on - strand, within SMa0750 at 403.395 kb on + strand, within SMa0750 at 403.395 kb on + strand, within SMa0750 at 403.587 kb on + strand, within SMa0750
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 401,151 - +0.3 401,151 - +0.1 401,151 - +0.3 401,232 + +0.2 401,232 + -0.9 401,233 - -0.4 401,256 + +0.2 401,297 + +0.1 401,553 + +0.2 401,764 + -0.1 401,764 + -0.3 401,764 + -0.0 401,764 + +1.0 401,941 - +0.4 401,957 - +0.2 402,041 + +0.2 402,042 - -1.0 402,059 + +0.5 402,059 + +0.3 402,084 + +0.8 402,163 + -1.2 402,164 - -0.1 402,199 - SMa0748 0.14 +1.4 402,479 - SMa0748 0.76 +0.5 402,490 - SMa0748 0.78 +1.4 402,626 + -0.3 402,644 - -0.2 402,704 - +0.0 402,704 - -1.4 402,704 - +0.4 402,757 - -2.3 402,821 + +1.1 402,857 + SMa5003 0.13 +0.9 402,911 + SMa5003 0.32 +0.4 402,911 + SMa5003 0.32 -0.3 402,911 + SMa5003 0.32 +0.0 402,911 + SMa5003 0.32 +0.7 402,912 - SMa5003 0.32 +0.0 402,912 - SMa5003 0.32 +0.8 402,924 - SMa5003 0.36 +0.3 402,971 + SMa5003 0.52 +0.2 402,973 + SMa5003 0.53 +0.2 402,973 + SMa5003 0.53 -0.0 402,985 + SMa5003 0.57 +0.6 403,048 - SMa5003 0.79 +0.1 403,180 - -0.4 403,383 + SMa0750 0.23 +0.1 403,383 + SMa0750 0.23 -0.3 403,384 - SMa0750 0.23 +1.0 403,384 - SMa0750 0.23 +0.1 403,395 + SMa0750 0.25 +0.5 403,395 + SMa0750 0.25 +1.1 403,587 + SMa0750 0.47 +1.4
Or see this region's nucleotide sequence