Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0337 and SMa0339 are separated by 25 nucleotides SMa0339 and SMa0340 are separated by 71 nucleotides SMa0340 and SMa0341 are separated by 223 nucleotides SMa0341 and SMa0343 are separated by 184 nucleotides
SMa0337: SMa0337 - hypothetical protein, at 184,339 to 184,821
SMa0337
SMa0339: SMa0339 - short chain alcohol dehydrogenase-related dehydrogenase, at 184,847 to 185,620
SMa0339
SMa0340: SMa0340 - TrpR binding protein WrbA, at 185,692 to 186,300
SMa0340
SMa0341: SMa0341 - hypothetical protein, at 186,524 to 186,718
SMa0341
SMa0343: SMa0343 - hypothetical protein, at 186,903 to 187,337
SMa0343
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 184.795 kb on + strand at 184.796 kb on + strand at 184.797 kb on - strand at 184.797 kb on - strand at 184.797 kb on - strand at 184.908 kb on + strand at 184.908 kb on + strand at 184.908 kb on + strand at 184.908 kb on + strand at 184.909 kb on - strand at 185.311 kb on - strand, within SMa0339 at 185.311 kb on - strand, within SMa0339 at 185.387 kb on + strand, within SMa0339 at 185.387 kb on + strand, within SMa0339 at 185.693 kb on + strand at 185.693 kb on + strand at 185.868 kb on + strand, within SMa0340 at 185.870 kb on + strand, within SMa0340 at 185.871 kb on - strand, within SMa0340 at 186.172 kb on - strand, within SMa0340 at 186.266 kb on + strand at 186.275 kb on + strand at 186.275 kb on + strand at 186.275 kb on + strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.302 kb on - strand at 186.479 kb on + strand at 186.480 kb on - strand at 186.529 kb on + strand at 186.564 kb on - strand, within SMa0341 at 186.622 kb on + strand, within SMa0341 at 186.751 kb on + strand at 186.829 kb on + strand at 186.829 kb on + strand at 186.904 kb on + strand at 187.072 kb on + strand at 187.198 kb on - strand, within SMa0343 at 187.198 kb on - strand, within SMa0343
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 184,795 + -1.0 184,796 + -1.1 184,797 - -0.4 184,797 - -0.0 184,797 - +0.7 184,908 + -0.6 184,908 + +0.1 184,908 + -0.4 184,908 + +0.2 184,909 - -0.2 185,311 - SMa0339 0.60 +0.9 185,311 - SMa0339 0.60 +1.0 185,387 + SMa0339 0.70 -0.0 185,387 + SMa0339 0.70 -0.3 185,693 + -1.0 185,693 + +0.2 185,868 + SMa0340 0.29 -0.3 185,870 + SMa0340 0.29 -0.2 185,871 - SMa0340 0.29 -1.0 186,172 - SMa0340 0.79 -0.9 186,266 + -0.5 186,275 + -0.0 186,275 + -0.3 186,275 + -1.1 186,276 - +0.1 186,276 - -1.4 186,302 - +0.7 186,479 + -1.4 186,480 - -0.0 186,529 + +0.4 186,564 - SMa0341 0.21 +0.3 186,622 + SMa0341 0.50 +0.4 186,751 + -0.1 186,829 + -0.3 186,829 + +1.2 186,904 + -0.4 187,072 + +0.9 187,198 - SMa0343 0.68 -0.4 187,198 - SMa0343 0.68 +0.3
Or see this region's nucleotide sequence