Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0179 and SMa0180 are separated by 117 nucleotides SMa0180 and SMa0181 are separated by 197 nucleotides SMa0181 and SMa0185 are separated by 255 nucleotides
SMa0179: SMa0179 - LysR family transcriptional regulator, at 98,400 to 99,317
SMa0179
SMa0180: SMa0180 - epimerase, at 99,435 to 100,307
SMa0180
SMa0181: SMa0181 - CspA5 cold shock protein transcriptional regulator, at 100,505 to 100,708
SMa0181
SMa0185: SMa0185 - transmembrane-transport protein, at 100,964 to 102,508
SMa0185
Position (kb) 99
100
101 Strain fitness (log2 ratio) -1
0
1 at 98.516 kb on - strand, within SMa0179 at 98.553 kb on + strand, within SMa0179 at 98.564 kb on + strand, within SMa0179 at 98.672 kb on + strand, within SMa0179 at 98.673 kb on - strand, within SMa0179 at 98.790 kb on + strand, within SMa0179 at 98.844 kb on - strand, within SMa0179 at 99.106 kb on + strand, within SMa0179 at 99.368 kb on + strand at 99.466 kb on + strand at 99.466 kb on + strand at 99.467 kb on - strand at 99.938 kb on + strand, within SMa0180 at 99.938 kb on + strand, within SMa0180 at 100.035 kb on + strand, within SMa0180 at 100.036 kb on - strand, within SMa0180 at 100.041 kb on + strand, within SMa0180 at 100.041 kb on + strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.350 kb on + strand at 100.477 kb on - strand at 100.566 kb on + strand, within SMa0181 at 100.566 kb on + strand, within SMa0181 at 100.703 kb on - strand at 100.711 kb on + strand at 100.711 kb on + strand at 100.755 kb on - strand at 100.755 kb on - strand at 100.793 kb on - strand at 100.793 kb on - strand at 100.814 kb on + strand at 100.814 kb on + strand at 100.815 kb on - strand at 101.144 kb on + strand, within SMa0185 at 101.145 kb on - strand, within SMa0185 at 101.145 kb on - strand, within SMa0185 at 101.145 kb on - strand, within SMa0185 at 101.145 kb on - strand, within SMa0185
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 98,516 - SMa0179 0.13 -0.3 98,553 + SMa0179 0.17 -0.2 98,564 + SMa0179 0.18 -0.2 98,672 + SMa0179 0.30 -0.4 98,673 - SMa0179 0.30 +0.1 98,790 + SMa0179 0.42 +1.3 98,844 - SMa0179 0.48 +0.4 99,106 + SMa0179 0.77 -0.0 99,368 + -0.9 99,466 + +0.1 99,466 + +0.5 99,467 - -0.3 99,938 + SMa0180 0.58 +0.3 99,938 + SMa0180 0.58 +0.2 100,035 + SMa0180 0.69 +0.5 100,036 - SMa0180 0.69 +0.3 100,041 + SMa0180 0.69 +0.6 100,041 + SMa0180 0.69 +0.5 100,042 - SMa0180 0.70 -1.0 100,042 - SMa0180 0.70 +0.1 100,042 - SMa0180 0.70 +0.2 100,042 - SMa0180 0.70 +1.2 100,042 - SMa0180 0.70 +0.2 100,042 - SMa0180 0.70 -0.4 100,350 + -0.2 100,477 - +0.0 100,566 + SMa0181 0.30 -0.9 100,566 + SMa0181 0.30 -0.0 100,703 - +1.0 100,711 + +0.1 100,711 + +1.0 100,755 - -0.2 100,755 - -0.1 100,793 - -0.2 100,793 - +0.2 100,814 + -0.5 100,814 + +0.2 100,815 - +0.1 101,144 + SMa0185 0.12 -0.9 101,145 - SMa0185 0.12 -0.5 101,145 - SMa0185 0.12 +0.2 101,145 - SMa0185 0.12 +1.0 101,145 - SMa0185 0.12 +1.0
Or see this region's nucleotide sequence