Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21017 and SM_b21018 overlap by 4 nucleotides SM_b21018 and SM_b21019 overlap by 8 nucleotides
SM_b21017: SM_b21017 - sugar ABC transporter permease, at 640,398 to 641,411
_b21017
SM_b21018: SM_b21018 - sugar ABC transporter permease, at 641,408 to 642,439
_b21018
SM_b21019: SM_b21019 - sugar ABC transporter ATP-binding protein, at 642,432 to 643,949
_b21019
Position (kb) 641
642
643 Strain fitness (log2 ratio) -1
0
1
2 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.631 kb on - strand, within SM_b21017 at 640.714 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 641.070 kb on + strand, within SM_b21017 at 641.071 kb on - strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.196 kb on - strand, within SM_b21017 at 641.241 kb on + strand, within SM_b21017 at 641.312 kb on + strand at 641.580 kb on + strand, within SM_b21018 at 641.626 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.831 kb on - strand, within SM_b21018 at 641.837 kb on + strand, within SM_b21018 at 641.880 kb on + strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.254 kb on - strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.278 kb on - strand, within SM_b21018 at 642.348 kb on + strand at 642.349 kb on - strand at 642.349 kb on - strand at 642.396 kb on - strand at 642.396 kb on - strand at 642.628 kb on + strand, within SM_b21019 at 642.815 kb on + strand, within SM_b21019 at 642.816 kb on - strand, within SM_b21019 at 642.816 kb on - strand, within SM_b21019 at 642.931 kb on + strand, within SM_b21019 at 642.954 kb on + strand, within SM_b21019 at 642.955 kb on - strand, within SM_b21019 at 643.112 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.256 kb on - strand, within SM_b21019 at 643.299 kb on + strand, within SM_b21019
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 640,630 + SM_b21017 0.23 -0.2 640,630 + SM_b21017 0.23 +0.2 640,630 + SM_b21017 0.23 -0.6 640,631 - SM_b21017 0.23 -0.2 640,714 + SM_b21017 0.31 -0.3 640,765 + SM_b21017 0.36 -0.2 640,765 + SM_b21017 0.36 -1.6 640,765 + SM_b21017 0.36 -0.0 640,766 - SM_b21017 0.36 -0.1 640,766 - SM_b21017 0.36 -0.3 641,070 + SM_b21017 0.66 -0.1 641,071 - SM_b21017 0.66 +0.8 641,164 + SM_b21017 0.76 -0.5 641,164 + SM_b21017 0.76 -1.2 641,165 - SM_b21017 0.76 +1.3 641,165 - SM_b21017 0.76 -0.6 641,196 - SM_b21017 0.79 +0.2 641,241 + SM_b21017 0.83 +1.3 641,312 + +0.1 641,580 + SM_b21018 0.17 -1.3 641,626 + SM_b21018 0.21 +0.7 641,690 + SM_b21018 0.27 -0.3 641,690 + SM_b21018 0.27 -0.2 641,690 + SM_b21018 0.27 +0.2 641,691 - SM_b21018 0.27 +0.2 641,691 - SM_b21018 0.27 +0.3 641,831 - SM_b21018 0.41 -0.2 641,837 + SM_b21018 0.42 +0.9 641,880 + SM_b21018 0.46 +1.1 642,106 - SM_b21018 0.68 -0.0 642,106 - SM_b21018 0.68 +0.2 642,254 - SM_b21018 0.82 +0.8 642,277 + SM_b21018 0.84 +0.1 642,277 + SM_b21018 0.84 +0.3 642,278 - SM_b21018 0.84 +0.4 642,348 + -1.3 642,349 - +0.5 642,349 - +1.1 642,396 - -0.0 642,396 - -0.9 642,628 + SM_b21019 0.13 +2.3 642,815 + SM_b21019 0.25 +0.9 642,816 - SM_b21019 0.25 -0.9 642,816 - SM_b21019 0.25 +0.4 642,931 + SM_b21019 0.33 -1.5 642,954 + SM_b21019 0.34 -1.4 642,955 - SM_b21019 0.34 -0.5 643,112 + SM_b21019 0.45 -0.2 643,255 + SM_b21019 0.54 -0.7 643,255 + SM_b21019 0.54 -0.6 643,255 + SM_b21019 0.54 -0.7 643,256 - SM_b21019 0.54 -0.7 643,299 + SM_b21019 0.57 +0.3
Or see this region's nucleotide sequence