Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20259 and SM_b20260 are separated by 47 nucleotides SM_b20260 and SM_b20261 are separated by 63 nucleotides SM_b20261 and SM_b20262 are separated by 242 nucleotides
SM_b20259: SM_b20259 - dihydrodipicolinate synthase, at 264,068 to 265,030
_b20259
SM_b20260: SM_b20260 - hypothetical protein, at 265,078 to 265,470
_b20260
SM_b20261: SM_b20261 - malate dehydrogenase, at 265,534 to 266,571
_b20261
SM_b20262: SM_b20262 - semialdehyde dehydrogenase, at 266,814 to 268,331
_b20262
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 264.711 kb on + strand, within SM_b20259 at 264.854 kb on + strand, within SM_b20259 at 264.980 kb on + strand at 264.980 kb on + strand at 265.020 kb on - strand at 265.142 kb on - strand, within SM_b20260 at 265.290 kb on - strand, within SM_b20260 at 265.340 kb on + strand, within SM_b20260 at 265.341 kb on - strand, within SM_b20260 at 265.341 kb on - strand, within SM_b20260 at 265.799 kb on + strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 266.045 kb on + strand, within SM_b20261 at 266.046 kb on - strand, within SM_b20261 at 266.327 kb on - strand, within SM_b20261 at 266.589 kb on - strand at 266.589 kb on - strand at 266.636 kb on + strand at 266.637 kb on - strand at 266.678 kb on - strand at 266.679 kb on + strand at 266.679 kb on + strand at 266.680 kb on - strand at 266.707 kb on + strand at 266.758 kb on + strand at 266.929 kb on + strand at 266.929 kb on + strand at 266.929 kb on + strand at 266.930 kb on - strand at 266.979 kb on + strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.986 kb on - strand, within SM_b20262 at 267.156 kb on - strand, within SM_b20262 at 267.171 kb on + strand, within SM_b20262 at 267.172 kb on - strand, within SM_b20262 at 267.232 kb on + strand, within SM_b20262 at 267.233 kb on - strand, within SM_b20262 at 267.355 kb on + strand, within SM_b20262 at 267.356 kb on - strand, within SM_b20262 at 267.445 kb on + strand, within SM_b20262 at 267.506 kb on + strand, within SM_b20262
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 264,711 + SM_b20259 0.67 +0.1 264,854 + SM_b20259 0.82 +0.5 264,980 + -2.8 264,980 + -0.8 265,020 - +0.3 265,142 - SM_b20260 0.16 +0.4 265,290 - SM_b20260 0.54 -1.5 265,340 + SM_b20260 0.67 -0.4 265,341 - SM_b20260 0.67 +0.6 265,341 - SM_b20260 0.67 +0.9 265,799 + SM_b20261 0.26 +0.3 265,800 - SM_b20261 0.26 -0.7 265,800 - SM_b20261 0.26 +0.5 265,800 - SM_b20261 0.26 -0.2 266,045 + SM_b20261 0.49 -0.0 266,046 - SM_b20261 0.49 +0.4 266,327 - SM_b20261 0.76 -0.5 266,589 - +1.8 266,589 - -0.2 266,636 + -0.0 266,637 - +0.2 266,678 - -0.9 266,679 + +0.0 266,679 + -0.0 266,680 - -0.0 266,707 + +1.5 266,758 + -0.6 266,929 + +0.4 266,929 + -0.8 266,929 + -0.2 266,930 - -0.0 266,979 + SM_b20262 0.11 -0.5 266,980 - SM_b20262 0.11 +0.0 266,980 - SM_b20262 0.11 -0.0 266,980 - SM_b20262 0.11 +0.3 266,986 - SM_b20262 0.11 +0.5 267,156 - SM_b20262 0.23 -0.5 267,171 + SM_b20262 0.24 -1.0 267,172 - SM_b20262 0.24 +0.9 267,232 + SM_b20262 0.28 +0.4 267,233 - SM_b20262 0.28 -0.7 267,355 + SM_b20262 0.36 -0.6 267,356 - SM_b20262 0.36 -0.1 267,445 + SM_b20262 0.42 -0.9 267,506 + SM_b20262 0.46 +0.6
Or see this region's nucleotide sequence