Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22095

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS26635 and RS_RS22090 are separated by 227 nucleotidesRS_RS22090 and RS_RS22095 overlap by 4 nucleotidesRS_RS22095 and RS_RS22100 overlap by 11 nucleotides RS_RS26635: RS_RS26635 - hypothetical protein, at 1,301,302 to 1,301,523 _RS26635 RS_RS22090: RS_RS22090 - hypothetical protein, at 1,301,751 to 1,302,482 _RS22090 RS_RS22095: RS_RS22095 - membrane protein, at 1,302,479 to 1,303,405 _RS22095 RS_RS22100: RS_RS22100 - metal-dependent hydrolase, at 1,303,395 to 1,304,147 _RS22100 Position (kb) 1302 1303 1304Strain fitness (log2 ratio) -3 -2 -1 0 1at 1301.491 kb on + strand, within RS_RS26635at 1301.492 kb on - strand, within RS_RS26635at 1301.579 kb on - strandat 1301.579 kb on - strandat 1301.579 kb on - strandat 1301.598 kb on - strandat 1301.640 kb on + strandat 1301.641 kb on - strandat 1302.173 kb on + strand, within RS_RS22090at 1302.173 kb on + strand, within RS_RS22090at 1302.173 kb on + strand, within RS_RS22090at 1302.173 kb on + strand, within RS_RS22090at 1302.173 kb on + strand, within RS_RS22090at 1302.174 kb on - strand, within RS_RS22090at 1302.174 kb on - strand, within RS_RS22090at 1302.174 kb on - strand, within RS_RS22090at 1302.174 kb on - strand, within RS_RS22090at 1302.177 kb on + strand, within RS_RS22090at 1302.177 kb on + strand, within RS_RS22090at 1302.177 kb on + strand, within RS_RS22090at 1302.177 kb on + strand, within RS_RS22090at 1302.177 kb on + strand, within RS_RS22090at 1302.178 kb on - strand, within RS_RS22090at 1302.178 kb on - strand, within RS_RS22090at 1302.178 kb on - strand, within RS_RS22090at 1302.246 kb on + strand, within RS_RS22090at 1302.246 kb on + strand, within RS_RS22090at 1302.246 kb on + strand, within RS_RS22090at 1302.247 kb on - strand, within RS_RS22090at 1302.247 kb on - strand, within RS_RS22090at 1302.247 kb on - strand, within RS_RS22090at 1302.247 kb on - strand, within RS_RS22090at 1302.294 kb on + strand, within RS_RS22090at 1302.298 kb on - strand, within RS_RS22090at 1302.343 kb on - strand, within RS_RS22090at 1302.767 kb on + strand, within RS_RS22095at 1302.768 kb on - strand, within RS_RS22095at 1302.783 kb on - strand, within RS_RS22095at 1302.833 kb on + strand, within RS_RS22095at 1302.833 kb on + strand, within RS_RS22095at 1302.834 kb on - strand, within RS_RS22095at 1303.100 kb on + strand, within RS_RS22095at 1303.101 kb on - strand, within RS_RS22095at 1303.295 kb on + strand, within RS_RS22095at 1303.295 kb on + strand, within RS_RS22095at 1303.295 kb on + strand, within RS_RS22095at 1303.296 kb on - strand, within RS_RS22095at 1303.296 kb on - strand, within RS_RS22095at 1303.296 kb on - strand, within RS_RS22095at 1303.296 kb on - strand, within RS_RS22095at 1303.437 kb on + strandat 1303.438 kb on - strandat 1303.438 kb on - strandat 1303.438 kb on - strandat 1303.632 kb on + strand, within RS_RS22100at 1303.633 kb on - strand, within RS_RS22100at 1303.977 kb on + strand, within RS_RS22100at 1303.977 kb on + strand, within RS_RS22100at 1303.977 kb on + strand, within RS_RS22100at 1303.977 kb on + strand, within RS_RS22100at 1303.979 kb on + strand, within RS_RS22100at 1303.979 kb on + strand, within RS_RS22100at 1303.980 kb on - strand, within RS_RS22100at 1303.980 kb on - strand, within RS_RS22100at 1303.980 kb on - strand, within RS_RS22100at 1304.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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1,301,491 + RS_RS26635 0.85 -0.1
1,301,492 - RS_RS26635 0.86 +1.1
1,301,579 - +0.3
1,301,579 - -0.1
1,301,579 - -2.3
1,301,598 - -1.4
1,301,640 + +0.6
1,301,641 - +0.2
1,302,173 + RS_RS22090 0.58 +0.3
1,302,173 + RS_RS22090 0.58 +0.6
1,302,173 + RS_RS22090 0.58 -0.8
1,302,173 + RS_RS22090 0.58 -0.8
1,302,173 + RS_RS22090 0.58 -0.8
1,302,174 - RS_RS22090 0.58 -0.3
1,302,174 - RS_RS22090 0.58 -1.2
1,302,174 - RS_RS22090 0.58 -0.5
1,302,174 - RS_RS22090 0.58 +0.6
1,302,177 + RS_RS22090 0.58 -1.0
1,302,177 + RS_RS22090 0.58 -0.7
1,302,177 + RS_RS22090 0.58 -1.0
1,302,177 + RS_RS22090 0.58 +0.5
1,302,177 + RS_RS22090 0.58 +0.9
1,302,178 - RS_RS22090 0.58 -1.5
1,302,178 - RS_RS22090 0.58 -3.0
1,302,178 - RS_RS22090 0.58 -0.7
1,302,246 + RS_RS22090 0.68 +0.0
1,302,246 + RS_RS22090 0.68 +1.5
1,302,246 + RS_RS22090 0.68 -0.2
1,302,247 - RS_RS22090 0.68 +0.1
1,302,247 - RS_RS22090 0.68 -1.7
1,302,247 - RS_RS22090 0.68 -0.2
1,302,247 - RS_RS22090 0.68 -1.0
1,302,294 + RS_RS22090 0.74 -0.2
1,302,298 - RS_RS22090 0.75 -0.4
1,302,343 - RS_RS22090 0.81 -0.6
1,302,767 + RS_RS22095 0.31 -0.1
1,302,768 - RS_RS22095 0.31 -2.0
1,302,783 - RS_RS22095 0.33 +0.6
1,302,833 + RS_RS22095 0.38 -1.5
1,302,833 + RS_RS22095 0.38 -1.1
1,302,834 - RS_RS22095 0.38 -0.2
1,303,100 + RS_RS22095 0.67 -1.6
1,303,101 - RS_RS22095 0.67 -0.1
1,303,295 + RS_RS22095 0.88 -0.8
1,303,295 + RS_RS22095 0.88 -0.7
1,303,295 + RS_RS22095 0.88 +0.4
1,303,296 - RS_RS22095 0.88 +0.1
1,303,296 - RS_RS22095 0.88 -0.5
1,303,296 - RS_RS22095 0.88 +0.1
1,303,296 - RS_RS22095 0.88 +0.4
1,303,437 + +0.2
1,303,438 - -0.4
1,303,438 - -0.5
1,303,438 - +0.5
1,303,632 + RS_RS22100 0.31 -0.1
1,303,633 - RS_RS22100 0.32 -0.0
1,303,977 + RS_RS22100 0.77 +0.0
1,303,977 + RS_RS22100 0.77 -0.3
1,303,977 + RS_RS22100 0.77 +0.7
1,303,977 + RS_RS22100 0.77 +0.8
1,303,979 + RS_RS22100 0.78 +1.3
1,303,979 + RS_RS22100 0.78 -0.2
1,303,980 - RS_RS22100 0.78 +0.4
1,303,980 - RS_RS22100 0.78 +0.4
1,303,980 - RS_RS22100 0.78 +0.7
1,304,242 + -0.2

Or see this region's nucleotide sequence