Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18300

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18295 and RS_RS18300 overlap by 4 nucleotidesRS_RS18300 and RS_RS26020 are separated by 65 nucleotidesRS_RS26020 and RS_RS18305 are separated by 329 nucleotides RS_RS18295: RS_RS18295 - malto-oligosyltrehalose trehalohydrolase, at 298,461 to 300,329 _RS18295 RS_RS18300: RS_RS18300 - glycogen debranching enzyme GlgX, at 300,326 to 302,590 _RS18300 RS_RS26020: RS_RS26020 - hypothetical protein, at 302,656 to 302,853 _RS26020 RS_RS18305: RS_RS18305 - glycogen-branching enzyme, at 303,183 to 305,510 _RS18305 Position (kb) 300 301 302 303Strain fitness (log2 ratio) -2 -1 0 1at 299.545 kb on + strand, within RS_RS18295at 299.545 kb on + strand, within RS_RS18295at 299.545 kb on + strand, within RS_RS18295at 299.546 kb on - strand, within RS_RS18295at 299.674 kb on + strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.702 kb on - strand, within RS_RS18295at 299.948 kb on - strand, within RS_RS18295at 299.948 kb on - strand, within RS_RS18295at 300.886 kb on + strand, within RS_RS18300at 300.888 kb on + strand, within RS_RS18300at 300.889 kb on - strand, within RS_RS18300at 301.191 kb on + strand, within RS_RS18300at 301.191 kb on + strand, within RS_RS18300at 301.191 kb on + strand, within RS_RS18300at 301.192 kb on - strand, within RS_RS18300at 301.639 kb on + strand, within RS_RS18300at 301.640 kb on - strand, within RS_RS18300at 301.665 kb on + strand, within RS_RS18300at 301.665 kb on + strand, within RS_RS18300at 301.666 kb on - strand, within RS_RS18300at 301.666 kb on - strand, within RS_RS18300at 301.668 kb on + strand, within RS_RS18300at 301.696 kb on - strand, within RS_RS18300at 301.698 kb on + strand, within RS_RS18300at 301.698 kb on + strand, within RS_RS18300at 301.698 kb on + strand, within RS_RS18300at 301.698 kb on + strand, within RS_RS18300at 301.698 kb on + strand, within RS_RS18300at 301.698 kb on + strand, within RS_RS18300at 301.699 kb on - strand, within RS_RS18300at 301.699 kb on - strand, within RS_RS18300at 301.854 kb on + strand, within RS_RS18300at 301.854 kb on + strand, within RS_RS18300at 301.855 kb on - strand, within RS_RS18300at 301.891 kb on - strand, within RS_RS18300at 301.899 kb on + strand, within RS_RS18300at 301.900 kb on - strand, within RS_RS18300at 302.091 kb on + strand, within RS_RS18300at 302.091 kb on + strand, within RS_RS18300at 302.091 kb on + strand, within RS_RS18300at 302.286 kb on + strand, within RS_RS18300at 302.287 kb on - strand, within RS_RS18300at 302.332 kb on - strand, within RS_RS18300at 302.365 kb on - strandat 302.365 kb on - strandat 302.395 kb on - strandat 302.543 kb on + strandat 302.551 kb on - strandat 302.551 kb on - strandat 302.585 kb on + strandat 303.264 kb on + strandat 303.265 kb on - strandat 303.265 kb on - strandat 303.265 kb on - strandat 303.448 kb on + strand, within RS_RS18305at 303.541 kb on + strand, within RS_RS18305at 303.542 kb on - strand, within RS_RS18305

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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299,545 + RS_RS18295 0.58 +0.0
299,545 + RS_RS18295 0.58 +1.3
299,545 + RS_RS18295 0.58 -0.2
299,546 - RS_RS18295 0.58 +0.8
299,674 + RS_RS18295 0.65 +0.3
299,675 - RS_RS18295 0.65 +0.1
299,675 - RS_RS18295 0.65 -0.2
299,675 - RS_RS18295 0.65 +0.1
299,675 - RS_RS18295 0.65 +0.3
299,675 - RS_RS18295 0.65 +0.2
299,702 - RS_RS18295 0.66 +1.7
299,948 - RS_RS18295 0.80 -2.1
299,948 - RS_RS18295 0.80 +1.1
300,886 + RS_RS18300 0.25 +0.2
300,888 + RS_RS18300 0.25 +0.2
300,889 - RS_RS18300 0.25 -0.7
301,191 + RS_RS18300 0.38 +0.2
301,191 + RS_RS18300 0.38 +0.3
301,191 + RS_RS18300 0.38 -0.2
301,192 - RS_RS18300 0.38 +0.8
301,639 + RS_RS18300 0.58 -0.0
301,640 - RS_RS18300 0.58 +0.2
301,665 + RS_RS18300 0.59 +0.2
301,665 + RS_RS18300 0.59 -1.0
301,666 - RS_RS18300 0.59 +0.2
301,666 - RS_RS18300 0.59 +0.1
301,668 + RS_RS18300 0.59 +0.9
301,696 - RS_RS18300 0.60 -0.5
301,698 + RS_RS18300 0.61 -0.1
301,698 + RS_RS18300 0.61 +0.1
301,698 + RS_RS18300 0.61 -0.8
301,698 + RS_RS18300 0.61 +1.1
301,698 + RS_RS18300 0.61 +0.3
301,698 + RS_RS18300 0.61 +0.4
301,699 - RS_RS18300 0.61 +0.6
301,699 - RS_RS18300 0.61 +0.8
301,854 + RS_RS18300 0.67 +0.7
301,854 + RS_RS18300 0.67 +0.2
301,855 - RS_RS18300 0.68 -0.2
301,891 - RS_RS18300 0.69 -0.1
301,899 + RS_RS18300 0.69 -0.6
301,900 - RS_RS18300 0.69 -0.5
302,091 + RS_RS18300 0.78 -0.4
302,091 + RS_RS18300 0.78 -0.1
302,091 + RS_RS18300 0.78 +0.5
302,286 + RS_RS18300 0.87 -0.7
302,287 - RS_RS18300 0.87 +0.4
302,332 - RS_RS18300 0.89 -0.5
302,365 - +0.3
302,365 - +0.2
302,395 - -0.8
302,543 + +0.1
302,551 - +0.1
302,551 - +0.1
302,585 + -0.1
303,264 + -0.1
303,265 - +0.3
303,265 - -0.5
303,265 - +0.8
303,448 + RS_RS18305 0.11 -0.4
303,541 + RS_RS18305 0.15 -0.1
303,542 - RS_RS18305 0.15 +0.6

Or see this region's nucleotide sequence