Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03060 and RS_RS03065 overlap by 20 nucleotides RS_RS03065 and RS_RS03070 overlap by 4 nucleotides RS_RS03070 and RS_RS03075 are separated by 88 nucleotides
RS_RS03060: RS_RS03060 - FMN-binding protein, at 657,781 to 658,296
_RS03060
RS_RS03065: RS_RS03065 - FAD:protein FMN transferase, at 658,277 to 659,173
_RS03065
RS_RS03070: RS_RS03070 - hypothetical protein, at 659,170 to 659,748
_RS03070
RS_RS03075: RS_RS03075 - hypothetical protein, at 659,837 to 660,409
_RS03075
Position (kb) 659
660 Strain fitness (log2 ratio) -1
0
1
2 at 658.242 kb on + strand, within RS_RS03060 at 658.276 kb on + strand at 658.276 kb on + strand at 658.276 kb on + strand at 658.276 kb on + strand at 658.277 kb on - strand at 658.277 kb on - strand at 658.277 kb on - strand at 658.277 kb on - strand at 658.294 kb on + strand at 658.502 kb on + strand, within RS_RS03065 at 658.503 kb on - strand, within RS_RS03065 at 659.240 kb on - strand, within RS_RS03070 at 659.240 kb on - strand, within RS_RS03070 at 659.512 kb on + strand, within RS_RS03070 at 659.512 kb on + strand, within RS_RS03070 at 659.512 kb on + strand, within RS_RS03070 at 659.512 kb on + strand, within RS_RS03070 at 659.512 kb on + strand, within RS_RS03070 at 659.513 kb on - strand, within RS_RS03070 at 659.513 kb on - strand, within RS_RS03070 at 659.513 kb on - strand, within RS_RS03070 at 659.605 kb on + strand, within RS_RS03070 at 659.605 kb on + strand, within RS_RS03070 at 659.606 kb on - strand, within RS_RS03070 at 659.608 kb on - strand, within RS_RS03070 at 659.872 kb on - strand at 660.102 kb on + strand, within RS_RS03075 at 660.103 kb on - strand, within RS_RS03075 at 660.103 kb on - strand, within RS_RS03075 at 660.147 kb on + strand, within RS_RS03075 at 660.148 kb on - strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.241 kb on - strand, within RS_RS03075 at 660.241 kb on - strand, within RS_RS03075 at 660.295 kb on + strand, within RS_RS03075 at 660.295 kb on + strand, within RS_RS03075 at 660.296 kb on - strand, within RS_RS03075 at 660.394 kb on + strand at 660.394 kb on + strand at 660.395 kb on - strand at 660.435 kb on - strand at 660.549 kb on + strand at 660.652 kb on + strand at 660.652 kb on + strand at 660.653 kb on - strand at 660.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 658,242 + RS_RS03060 0.89 +2.0 658,276 + +0.1 658,276 + +0.3 658,276 + -0.5 658,276 + +0.3 658,277 - +1.2 658,277 - -0.1 658,277 - -0.4 658,277 - -1.3 658,294 + +2.6 658,502 + RS_RS03065 0.25 -0.3 658,503 - RS_RS03065 0.25 +0.1 659,240 - RS_RS03070 0.12 -0.1 659,240 - RS_RS03070 0.12 -0.5 659,512 + RS_RS03070 0.59 +0.2 659,512 + RS_RS03070 0.59 +0.6 659,512 + RS_RS03070 0.59 +0.1 659,512 + RS_RS03070 0.59 +0.5 659,512 + RS_RS03070 0.59 -0.6 659,513 - RS_RS03070 0.59 -1.3 659,513 - RS_RS03070 0.59 -0.3 659,513 - RS_RS03070 0.59 +0.4 659,605 + RS_RS03070 0.75 +0.2 659,605 + RS_RS03070 0.75 -0.1 659,606 - RS_RS03070 0.75 +0.4 659,608 - RS_RS03070 0.76 -0.4 659,872 - +1.5 660,102 + RS_RS03075 0.46 +1.0 660,103 - RS_RS03075 0.46 -0.3 660,103 - RS_RS03075 0.46 +0.3 660,147 + RS_RS03075 0.54 -0.3 660,148 - RS_RS03075 0.54 -0.1 660,240 + RS_RS03075 0.70 +1.7 660,240 + RS_RS03075 0.70 -0.9 660,240 + RS_RS03075 0.70 +0.9 660,240 + RS_RS03075 0.70 +2.0 660,240 + RS_RS03075 0.70 +0.5 660,240 + RS_RS03075 0.70 -0.3 660,240 + RS_RS03075 0.70 +0.2 660,241 - RS_RS03075 0.71 -0.6 660,241 - RS_RS03075 0.71 -0.2 660,295 + RS_RS03075 0.80 +1.1 660,295 + RS_RS03075 0.80 -0.9 660,296 - RS_RS03075 0.80 +0.7 660,394 + -0.0 660,394 + -0.8 660,395 - -0.3 660,435 - +0.1 660,549 + -0.4 660,652 + +0.0 660,652 + +0.0 660,653 - +1.0 660,659 + +0.6
Or see this region's nucleotide sequence