Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17375 and RALBFv3_RS17380 are separated by 77 nucleotides RALBFv3_RS17380 and RALBFv3_RS17385 are separated by 49 nucleotides RALBFv3_RS17385 and RALBFv3_RS17390 are separated by 16 nucleotides
RALBFv3_RS17375: RALBFv3_RS17375 - flagellar motor stator protein MotA, at 390,279 to 391,139
_RS17375
RALBFv3_RS17380: RALBFv3_RS17380 - motility protein MotB, at 391,217 to 392,194
_RS17380
RALBFv3_RS17385: RALBFv3_RS17385 - response regulator, at 392,244 to 392,657
_RS17385
RALBFv3_RS17390: RALBFv3_RS17390 - chemotaxis protein CheA, at 392,674 to 394,848
_RS17390
Position (kb) 391
392
393 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 390.243 kb on + strand at 390.243 kb on + strand at 390.243 kb on + strand at 390.243 kb on + strand at 390.244 kb on - strand at 390.244 kb on - strand at 390.246 kb on - strand at 390.283 kb on + strand at 390.284 kb on - strand at 390.284 kb on - strand at 390.284 kb on - strand at 390.297 kb on + strand at 390.298 kb on - strand at 390.298 kb on - strand at 390.330 kb on + strand at 390.330 kb on + strand at 390.331 kb on - strand at 390.486 kb on + strand, within RALBFv3_RS17375 at 390.486 kb on + strand, within RALBFv3_RS17375 at 390.487 kb on - strand, within RALBFv3_RS17375 at 390.487 kb on - strand, within RALBFv3_RS17375 at 390.501 kb on + strand, within RALBFv3_RS17375 at 390.502 kb on - strand, within RALBFv3_RS17375 at 390.502 kb on - strand, within RALBFv3_RS17375 at 390.526 kb on - strand, within RALBFv3_RS17375 at 390.526 kb on - strand, within RALBFv3_RS17375 at 390.616 kb on - strand, within RALBFv3_RS17375 at 390.616 kb on - strand, within RALBFv3_RS17375 at 390.616 kb on - strand, within RALBFv3_RS17375 at 390.663 kb on + strand, within RALBFv3_RS17375 at 390.663 kb on + strand, within RALBFv3_RS17375 at 390.927 kb on + strand, within RALBFv3_RS17375 at 391.032 kb on + strand, within RALBFv3_RS17375 at 391.138 kb on - strand at 391.169 kb on + strand at 391.195 kb on + strand at 391.196 kb on - strand at 391.400 kb on + strand, within RALBFv3_RS17380 at 391.401 kb on - strand, within RALBFv3_RS17380 at 391.547 kb on - strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.742 kb on + strand, within RALBFv3_RS17380 at 391.743 kb on - strand, within RALBFv3_RS17380 at 391.743 kb on - strand, within RALBFv3_RS17380 at 391.743 kb on - strand, within RALBFv3_RS17380 at 391.833 kb on - strand, within RALBFv3_RS17380 at 391.833 kb on - strand, within RALBFv3_RS17380 at 392.476 kb on - strand, within RALBFv3_RS17385 at 392.656 kb on - strand at 392.656 kb on - strand at 393.025 kb on + strand, within RALBFv3_RS17390 at 393.025 kb on + strand, within RALBFv3_RS17390 at 393.025 kb on + strand, within RALBFv3_RS17390 at 393.026 kb on - strand, within RALBFv3_RS17390 at 393.026 kb on - strand, within RALBFv3_RS17390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 390,243 + -0.2 390,243 + +0.3 390,243 + -0.8 390,243 + -1.0 390,244 - -0.9 390,244 - -2.2 390,246 - +0.0 390,283 + +0.4 390,284 - +1.3 390,284 - +0.2 390,284 - -0.4 390,297 + +3.5 390,298 - +1.2 390,298 - +0.2 390,330 + +0.8 390,330 + +0.6 390,331 - +0.1 390,486 + RALBFv3_RS17375 0.24 +0.7 390,486 + RALBFv3_RS17375 0.24 +0.6 390,487 - RALBFv3_RS17375 0.24 +0.2 390,487 - RALBFv3_RS17375 0.24 -0.6 390,501 + RALBFv3_RS17375 0.26 +1.2 390,502 - RALBFv3_RS17375 0.26 +0.1 390,502 - RALBFv3_RS17375 0.26 +0.2 390,526 - RALBFv3_RS17375 0.29 +1.1 390,526 - RALBFv3_RS17375 0.29 -0.3 390,616 - RALBFv3_RS17375 0.39 +0.5 390,616 - RALBFv3_RS17375 0.39 +1.2 390,616 - RALBFv3_RS17375 0.39 +0.2 390,663 + RALBFv3_RS17375 0.45 +1.5 390,663 + RALBFv3_RS17375 0.45 -0.4 390,927 + RALBFv3_RS17375 0.75 -1.2 391,032 + RALBFv3_RS17375 0.87 +0.1 391,138 - -1.3 391,169 + -0.5 391,195 + +3.0 391,196 - -0.4 391,400 + RALBFv3_RS17380 0.19 +1.1 391,401 - RALBFv3_RS17380 0.19 -0.2 391,547 - RALBFv3_RS17380 0.34 -0.4 391,742 + RALBFv3_RS17380 0.54 -0.1 391,742 + RALBFv3_RS17380 0.54 +0.9 391,742 + RALBFv3_RS17380 0.54 -1.1 391,742 + RALBFv3_RS17380 0.54 +0.5 391,742 + RALBFv3_RS17380 0.54 +0.6 391,743 - RALBFv3_RS17380 0.54 +0.3 391,743 - RALBFv3_RS17380 0.54 -0.5 391,743 - RALBFv3_RS17380 0.54 +0.2 391,833 - RALBFv3_RS17380 0.63 -0.6 391,833 - RALBFv3_RS17380 0.63 +2.8 392,476 - RALBFv3_RS17385 0.56 +1.6 392,656 - -0.3 392,656 - -0.0 393,025 + RALBFv3_RS17390 0.16 +1.2 393,025 + RALBFv3_RS17390 0.16 +1.2 393,025 + RALBFv3_RS17390 0.16 -1.3 393,026 - RALBFv3_RS17390 0.16 +0.2 393,026 - RALBFv3_RS17390 0.16 -1.1
Or see this region's nucleotide sequence