Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02345 and RALBFv3_RS02350 overlap by 4 nucleotides RALBFv3_RS02350 and RALBFv3_RS02355 overlap by 4 nucleotides RALBFv3_RS02355 and RALBFv3_RS02360 overlap by 4 nucleotides RALBFv3_RS02360 and RALBFv3_RS02365 overlap by 4 nucleotides
RALBFv3_RS02345: RALBFv3_RS02345 - NAD(P)/FAD-dependent oxidoreductase, at 521,763 to 523,283
_RS02345
RALBFv3_RS02350: RALBFv3_RS02350 - ABC transporter permease, at 523,280 to 524,266
_RS02350
RALBFv3_RS02355: RALBFv3_RS02355 - ABC transporter permease, at 524,263 to 525,207
_RS02355
RALBFv3_RS02360: RALBFv3_RS02360 - ABC transporter ATP-binding protein, at 525,204 to 526,202
_RS02360
RALBFv3_RS02365: RALBFv3_RS02365 - ABC transporter ATP-binding protein, at 526,199 to 527,200
_RS02365
Position (kb) 524
525
526 Strain fitness (log2 ratio) -2
-1
0
1 at 524.153 kb on + strand, within RALBFv3_RS02350 at 524.154 kb on - strand, within RALBFv3_RS02350 at 524.828 kb on - strand, within RALBFv3_RS02355 at 524.876 kb on - strand, within RALBFv3_RS02355 at 525.082 kb on + strand, within RALBFv3_RS02355 at 525.082 kb on + strand, within RALBFv3_RS02355 at 525.082 kb on + strand, within RALBFv3_RS02355 at 525.083 kb on - strand, within RALBFv3_RS02355 at 525.083 kb on - strand, within RALBFv3_RS02355 at 525.083 kb on - strand at 525.083 kb on - strand, within RALBFv3_RS02355 at 525.083 kb on - strand, within RALBFv3_RS02355 at 525.083 kb on - strand, within RALBFv3_RS02355 at 525.083 kb on - strand, within RALBFv3_RS02355 at 525.083 kb on - strand, within RALBFv3_RS02355 at 525.114 kb on - strand at 525.664 kb on - strand, within RALBFv3_RS02360
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 524,153 + RALBFv3_RS02350 0.88 -0.7 524,154 - RALBFv3_RS02350 0.89 -0.4 524,828 - RALBFv3_RS02355 0.60 +1.2 524,876 - RALBFv3_RS02355 0.65 +0.8 525,082 + RALBFv3_RS02355 0.87 -0.2 525,082 + RALBFv3_RS02355 0.87 +0.0 525,082 + RALBFv3_RS02355 0.87 -0.4 525,083 - RALBFv3_RS02355 0.87 +0.3 525,083 - RALBFv3_RS02355 0.87 +1.5 525,083 - -0.2 525,083 - RALBFv3_RS02355 0.87 +0.4 525,083 - RALBFv3_RS02355 0.87 +0.3 525,083 - RALBFv3_RS02355 0.87 -0.4 525,083 - RALBFv3_RS02355 0.87 -1.8 525,083 - RALBFv3_RS02355 0.87 +0.4 525,114 - -1.2 525,664 - RALBFv3_RS02360 0.46 -0.8
Or see this region's nucleotide sequence