Experiment: KB with Gossypetin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3878 and Psyr_3879 are separated by 6 nucleotides Psyr_3879 and Psyr_3880 are separated by 293 nucleotides Psyr_3880 and Psyr_3881 overlap by 4 nucleotides Psyr_3881 and Psyr_3882 are separated by 65 nucleotides
Psyr_3878: Psyr_3878 - amino acid ABC transporter ATP-binding protein, PAAT family, at 4,618,847 to 4,619,611
_3878
Psyr_3879: Psyr_3879 - hypothetical protein, at 4,619,618 to 4,620,172
_3879
Psyr_3880: Psyr_3880 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 4,620,466 to 4,622,958
_3880
Psyr_3881: Psyr_3881 - conserved hypothetical protein, at 4,622,955 to 4,623,611
_3881
Psyr_3882: Psyr_3882 - conserved hypothetical protein, at 4,623,677 to 4,623,898
_3882
Position (kb) 4620
4621
4622
4623 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4619.505 kb on + strand, within Psyr_3878 at 4619.506 kb on - strand, within Psyr_3878 at 4619.609 kb on + strand at 4619.610 kb on - strand at 4619.610 kb on - strand at 4619.626 kb on + strand at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.686 kb on - strand, within Psyr_3879 at 4619.686 kb on - strand, within Psyr_3879 at 4620.120 kb on + strand at 4620.397 kb on + strand at 4620.397 kb on + strand at 4620.398 kb on - strand at 4620.405 kb on + strand at 4620.405 kb on + strand at 4620.405 kb on + strand at 4620.406 kb on - strand at 4620.406 kb on - strand at 4620.410 kb on + strand at 4620.410 kb on + strand at 4620.410 kb on + strand at 4620.411 kb on - strand at 4620.413 kb on + strand at 4620.439 kb on - strand at 4620.607 kb on + strand at 4620.607 kb on + strand at 4620.651 kb on + strand at 4621.071 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.424 kb on + strand, within Psyr_3880 at 4621.424 kb on + strand, within Psyr_3880 at 4621.425 kb on - strand, within Psyr_3880 at 4621.742 kb on + strand, within Psyr_3880 at 4621.743 kb on - strand, within Psyr_3880 at 4621.743 kb on - strand, within Psyr_3880 at 4621.760 kb on - strand, within Psyr_3880 at 4621.760 kb on - strand, within Psyr_3880 at 4621.760 kb on - strand, within Psyr_3880 at 4621.960 kb on + strand, within Psyr_3880 at 4621.961 kb on - strand, within Psyr_3880 at 4622.079 kb on - strand, within Psyr_3880 at 4622.096 kb on - strand, within Psyr_3880 at 4622.096 kb on - strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.599 kb on - strand, within Psyr_3880 at 4622.695 kb on + strand, within Psyr_3880 at 4622.696 kb on - strand, within Psyr_3880 at 4622.696 kb on - strand, within Psyr_3880 at 4622.817 kb on + strand at 4622.820 kb on - strand at 4622.820 kb on - strand at 4622.820 kb on - strand at 4622.964 kb on + strand at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.412 kb on + strand, within Psyr_3881 at 4623.412 kb on + strand, within Psyr_3881 at 4623.412 kb on + strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.439 kb on - strand, within Psyr_3881 at 4623.486 kb on + strand, within Psyr_3881 at 4623.486 kb on + strand, within Psyr_3881 at 4623.486 kb on + strand, within Psyr_3881 at 4623.487 kb on - strand, within Psyr_3881 at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.630 kb on - strand at 4623.715 kb on + strand, within Psyr_3882 at 4623.716 kb on - strand, within Psyr_3882 at 4623.716 kb on - strand, within Psyr_3882 at 4623.889 kb on + strand at 4623.890 kb on - strand at 4623.890 kb on - strand at 4623.929 kb on + strand at 4623.930 kb on - strand at 4623.930 kb on - strand at 4623.930 kb on - strand at 4623.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Gossypetin 10 mM remove 4,619,505 + Psyr_3878 0.86 -0.7 4,619,506 - Psyr_3878 0.86 +1.5 4,619,609 + +0.5 4,619,610 - -0.2 4,619,610 - -0.5 4,619,626 + +0.9 4,619,685 + Psyr_3879 0.12 +3.0 4,619,685 + Psyr_3879 0.12 +0.0 4,619,685 + Psyr_3879 0.12 +1.0 4,619,685 + Psyr_3879 0.12 +0.5 4,619,685 + Psyr_3879 0.12 +0.2 4,619,685 + Psyr_3879 0.12 -0.7 4,619,686 - Psyr_3879 0.12 +0.7 4,619,686 - Psyr_3879 0.12 -2.2 4,620,120 + +0.5 4,620,397 + +0.3 4,620,397 + +0.2 4,620,398 - +0.5 4,620,405 + -0.7 4,620,405 + +1.7 4,620,405 + -0.8 4,620,406 - +0.8 4,620,406 - -0.6 4,620,410 + -0.8 4,620,410 + -0.3 4,620,410 + -0.1 4,620,411 - -1.3 4,620,413 + +0.0 4,620,439 - +0.9 4,620,607 + -1.0 4,620,607 + +1.0 4,620,651 + -1.7 4,621,071 + Psyr_3880 0.24 -1.3 4,621,292 + Psyr_3880 0.33 -0.4 4,621,292 + Psyr_3880 0.33 -1.8 4,621,292 + Psyr_3880 0.33 -0.0 4,621,292 + Psyr_3880 0.33 +0.9 4,621,292 + Psyr_3880 0.33 +1.7 4,621,293 - Psyr_3880 0.33 +1.0 4,621,293 - Psyr_3880 0.33 +2.6 4,621,293 - Psyr_3880 0.33 -0.4 4,621,293 - Psyr_3880 0.33 +1.0 4,621,293 - Psyr_3880 0.33 +1.0 4,621,293 - Psyr_3880 0.33 +0.2 4,621,424 + Psyr_3880 0.38 +0.5 4,621,424 + Psyr_3880 0.38 +0.7 4,621,425 - Psyr_3880 0.38 -0.3 4,621,742 + Psyr_3880 0.51 +0.2 4,621,743 - Psyr_3880 0.51 +0.0 4,621,743 - Psyr_3880 0.51 -0.3 4,621,760 - Psyr_3880 0.52 +2.0 4,621,760 - Psyr_3880 0.52 +0.7 4,621,760 - Psyr_3880 0.52 -1.1 4,621,960 + Psyr_3880 0.60 -0.6 4,621,961 - Psyr_3880 0.60 +0.8 4,622,079 - Psyr_3880 0.65 +0.8 4,622,096 - Psyr_3880 0.65 +1.1 4,622,096 - Psyr_3880 0.65 +1.6 4,622,339 + Psyr_3880 0.75 +1.9 4,622,339 + Psyr_3880 0.75 -0.6 4,622,339 + Psyr_3880 0.75 -0.9 4,622,339 + Psyr_3880 0.75 -0.2 4,622,339 + Psyr_3880 0.75 -1.6 4,622,339 + Psyr_3880 0.75 +1.2 4,622,339 + Psyr_3880 0.75 -1.8 4,622,339 + Psyr_3880 0.75 -0.1 4,622,339 + Psyr_3880 0.75 +0.7 4,622,340 - Psyr_3880 0.75 -0.1 4,622,340 - Psyr_3880 0.75 +1.0 4,622,340 - Psyr_3880 0.75 -0.8 4,622,340 - Psyr_3880 0.75 +0.5 4,622,340 - Psyr_3880 0.75 +0.7 4,622,599 - Psyr_3880 0.86 -0.0 4,622,695 + Psyr_3880 0.89 +0.4 4,622,696 - Psyr_3880 0.89 -0.8 4,622,696 - Psyr_3880 0.89 +0.0 4,622,817 + -0.1 4,622,820 - -0.9 4,622,820 - -1.3 4,622,820 - +1.7 4,622,964 + -2.3 4,623,021 + Psyr_3881 0.10 -0.7 4,623,021 + Psyr_3881 0.10 -0.6 4,623,021 + Psyr_3881 0.10 +0.3 4,623,021 + Psyr_3881 0.10 -1.0 4,623,021 + Psyr_3881 0.10 -1.8 4,623,021 + Psyr_3881 0.10 +1.6 4,623,021 + Psyr_3881 0.10 -0.3 4,623,021 + Psyr_3881 0.10 +0.9 4,623,021 + Psyr_3881 0.10 +1.6 4,623,021 + Psyr_3881 0.10 -0.8 4,623,021 + Psyr_3881 0.10 -0.3 4,623,022 - Psyr_3881 0.10 +0.6 4,623,022 - Psyr_3881 0.10 -0.2 4,623,022 - Psyr_3881 0.10 +3.0 4,623,022 - Psyr_3881 0.10 -1.6 4,623,022 - Psyr_3881 0.10 -0.0 4,623,022 - Psyr_3881 0.10 -1.1 4,623,022 - Psyr_3881 0.10 +0.4 4,623,022 - Psyr_3881 0.10 -0.4 4,623,022 - Psyr_3881 0.10 -2.6 4,623,412 + Psyr_3881 0.70 +2.2 4,623,412 + Psyr_3881 0.70 +0.7 4,623,412 + Psyr_3881 0.70 +0.0 4,623,413 - Psyr_3881 0.70 -0.1 4,623,413 - Psyr_3881 0.70 -0.4 4,623,413 - Psyr_3881 0.70 +2.4 4,623,413 - Psyr_3881 0.70 -0.4 4,623,439 - Psyr_3881 0.74 +1.4 4,623,486 + Psyr_3881 0.81 -0.3 4,623,486 + Psyr_3881 0.81 +0.3 4,623,486 + Psyr_3881 0.81 -0.4 4,623,487 - Psyr_3881 0.81 +0.0 4,623,573 + +0.6 4,623,573 + -1.2 4,623,573 + -0.3 4,623,573 + +1.0 4,623,573 + +1.6 4,623,573 + +0.3 4,623,573 + -1.4 4,623,573 + -0.9 4,623,573 + +0.0 4,623,573 + +0.1 4,623,573 + +1.0 4,623,574 - -1.0 4,623,574 - -1.1 4,623,574 - +0.3 4,623,574 - +1.0 4,623,574 - +2.6 4,623,574 - -0.1 4,623,574 - -0.5 4,623,574 - +1.5 4,623,574 - -0.6 4,623,574 - +0.5 4,623,574 - -1.8 4,623,574 - +0.7 4,623,574 - +0.0 4,623,574 - -0.9 4,623,574 - +0.4 4,623,629 + +0.2 4,623,629 + -1.7 4,623,629 + -0.7 4,623,629 + -0.2 4,623,629 + -0.2 4,623,630 - -0.9 4,623,715 + Psyr_3882 0.17 +2.6 4,623,716 - Psyr_3882 0.18 +0.6 4,623,716 - Psyr_3882 0.18 +1.2 4,623,889 + +0.2 4,623,890 - +1.4 4,623,890 - +0.6 4,623,929 + +1.5 4,623,930 - -1.2 4,623,930 - +1.7 4,623,930 - +0.1 4,623,938 - +0.6
Or see this region's nucleotide sequence