Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2731

Experiment: KB with Gossypetin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2730 and Psyr_2731 are separated by 328 nucleotidesPsyr_2731 and Psyr_2732 are separated by 511 nucleotides Psyr_2730: Psyr_2730 - outer membrane porin, at 3,313,111 to 3,314,433 _2730 Psyr_2731: Psyr_2731 - General substrate transporter:Major facilitator superfamily, at 3,314,762 to 3,315,982 _2731 Psyr_2732: Psyr_2732 - conserved hypothetical protein; putative signal peptide, at 3,316,494 to 3,317,441 _2732 Position (kb) 3314 3315 3316Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3313.763 kb on + strand, within Psyr_2730at 3313.764 kb on - strand, within Psyr_2730at 3313.832 kb on + strand, within Psyr_2730at 3313.833 kb on - strand, within Psyr_2730at 3313.833 kb on - strand, within Psyr_2730at 3313.833 kb on - strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3314.045 kb on + strand, within Psyr_2730at 3314.046 kb on - strand, within Psyr_2730at 3314.249 kb on + strand, within Psyr_2730at 3314.249 kb on + strand, within Psyr_2730at 3314.249 kb on + strand, within Psyr_2730at 3314.250 kb on - strand, within Psyr_2730at 3314.250 kb on - strand, within Psyr_2730at 3314.250 kb on - strand, within Psyr_2730at 3314.262 kb on + strand, within Psyr_2730at 3314.262 kb on + strand, within Psyr_2730at 3314.263 kb on - strand, within Psyr_2730at 3314.263 kb on - strand, within Psyr_2730at 3314.263 kb on - strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.267 kb on + strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.448 kb on + strandat 3314.448 kb on + strandat 3314.448 kb on + strandat 3314.449 kb on - strandat 3314.449 kb on - strandat 3314.449 kb on - strandat 3314.809 kb on + strandat 3314.810 kb on - strandat 3315.041 kb on + strand, within Psyr_2731at 3315.041 kb on + strand, within Psyr_2731at 3315.041 kb on + strand, within Psyr_2731at 3315.042 kb on - strand, within Psyr_2731at 3315.179 kb on + strand, within Psyr_2731at 3315.179 kb on + strand, within Psyr_2731at 3315.180 kb on - strand, within Psyr_2731at 3315.180 kb on - strand, within Psyr_2731at 3315.180 kb on - strand, within Psyr_2731at 3315.285 kb on + strand, within Psyr_2731at 3315.426 kb on - strand, within Psyr_2731at 3315.426 kb on - strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.449 kb on + strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.450 kb on - strand, within Psyr_2731at 3315.728 kb on + strand, within Psyr_2731at 3315.728 kb on + strand, within Psyr_2731at 3315.729 kb on - strand, within Psyr_2731at 3315.729 kb on - strand, within Psyr_2731at 3315.729 kb on - strand, within Psyr_2731at 3316.060 kb on + strandat 3316.060 kb on + strandat 3316.061 kb on - strandat 3316.061 kb on - strandat 3316.061 kb on - strandat 3316.064 kb on + strandat 3316.064 kb on + strandat 3316.064 kb on + strandat 3316.064 kb on + strandat 3316.064 kb on + strandat 3316.064 kb on + strandat 3316.065 kb on - strandat 3316.065 kb on - strandat 3316.065 kb on - strandat 3316.065 kb on - strandat 3316.065 kb on - strandat 3316.065 kb on - strandat 3316.067 kb on - strandat 3316.067 kb on - strandat 3316.067 kb on - strandat 3316.119 kb on + strandat 3316.409 kb on + strandat 3316.409 kb on + strandat 3316.409 kb on + strandat 3316.409 kb on + strandat 3316.409 kb on + strandat 3316.409 kb on + strandat 3316.410 kb on - strandat 3316.410 kb on - strandat 3316.410 kb on - strandat 3316.410 kb on - strandat 3316.410 kb on - strandat 3316.473 kb on + strandat 3316.483 kb on + strandat 3316.483 kb on + strandat 3316.483 kb on + strandat 3316.483 kb on + strandat 3316.495 kb on + strandat 3316.526 kb on + strandat 3316.526 kb on + strandat 3316.526 kb on + strandat 3316.526 kb on + strandat 3316.527 kb on - strandat 3316.527 kb on - strandat 3316.527 kb on - strandat 3316.530 kb on - strandat 3316.530 kb on - strandat 3316.564 kb on + strandat 3316.564 kb on + strandat 3316.564 kb on + strandat 3316.565 kb on - strandat 3316.568 kb on + strandat 3316.568 kb on + strandat 3316.568 kb on + strandat 3316.568 kb on + strandat 3316.568 kb on + strandat 3316.569 kb on - strandat 3316.603 kb on + strand, within Psyr_2732at 3316.604 kb on - strand, within Psyr_2732at 3316.735 kb on + strand, within Psyr_2732at 3316.834 kb on + strand, within Psyr_2732at 3316.834 kb on + strand, within Psyr_2732at 3316.835 kb on - strand, within Psyr_2732at 3316.835 kb on - strand, within Psyr_2732at 3316.835 kb on - strand, within Psyr_2732at 3316.835 kb on - strand, within Psyr_2732at 3316.835 kb on - strand, within Psyr_2732at 3316.835 kb on - strand, within Psyr_2732at 3316.835 kb on - strand, within Psyr_2732at 3316.876 kb on + strand, within Psyr_2732

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypetin 10 mM
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3,313,763 + Psyr_2730 0.49 +1.1
3,313,764 - Psyr_2730 0.49 -0.2
3,313,832 + Psyr_2730 0.54 +0.5
3,313,833 - Psyr_2730 0.55 -1.6
3,313,833 - Psyr_2730 0.55 +0.2
3,313,833 - Psyr_2730 0.55 +0.5
3,313,894 + Psyr_2730 0.59 -1.1
3,313,894 + Psyr_2730 0.59 +0.1
3,313,894 + Psyr_2730 0.59 +0.6
3,313,894 + Psyr_2730 0.59 -0.8
3,313,894 + Psyr_2730 0.59 +2.7
3,313,894 + Psyr_2730 0.59 +0.2
3,313,894 + Psyr_2730 0.59 -0.2
3,313,894 + Psyr_2730 0.59 +2.7
3,313,894 + Psyr_2730 0.59 -0.6
3,313,894 + Psyr_2730 0.59 +3.6
3,313,894 + Psyr_2730 0.59 -1.2
3,313,894 + Psyr_2730 0.59 +0.9
3,313,894 + Psyr_2730 0.59 +0.1
3,313,894 + Psyr_2730 0.59 -1.2
3,313,894 + Psyr_2730 0.59 +1.0
3,313,894 + Psyr_2730 0.59 +0.1
3,313,894 + Psyr_2730 0.59 +0.5
3,313,894 + Psyr_2730 0.59 +0.6
3,313,894 + Psyr_2730 0.59 -0.0
3,313,894 + Psyr_2730 0.59 -0.3
3,313,894 + Psyr_2730 0.59 +0.8
3,313,894 + Psyr_2730 0.59 +0.1
3,313,895 - Psyr_2730 0.59 +0.7
3,313,895 - Psyr_2730 0.59 -0.2
3,313,895 - Psyr_2730 0.59 -1.0
3,313,895 - Psyr_2730 0.59 +2.7
3,313,895 - Psyr_2730 0.59 -0.1
3,313,895 - Psyr_2730 0.59 -1.8
3,313,895 - Psyr_2730 0.59 +0.1
3,313,895 - Psyr_2730 0.59 -1.5
3,313,895 - Psyr_2730 0.59 -2.3
3,313,895 - Psyr_2730 0.59 +0.7
3,313,895 - Psyr_2730 0.59 +1.3
3,314,045 + Psyr_2730 0.71 +2.5
3,314,046 - Psyr_2730 0.71 +2.1
3,314,249 + Psyr_2730 0.86 -2.7
3,314,249 + Psyr_2730 0.86 +2.7
3,314,249 + Psyr_2730 0.86 +0.9
3,314,250 - Psyr_2730 0.86 +4.6
3,314,250 - Psyr_2730 0.86 +1.1
3,314,250 - Psyr_2730 0.86 +1.1
3,314,262 + Psyr_2730 0.87 -0.0
3,314,262 + Psyr_2730 0.87 +1.1
3,314,263 - Psyr_2730 0.87 -3.4
3,314,263 - Psyr_2730 0.87 +0.9
3,314,263 - Psyr_2730 0.87 +3.2
3,314,264 + Psyr_2730 0.87 -1.0
3,314,264 + Psyr_2730 0.87 +1.1
3,314,264 + Psyr_2730 0.87 +0.0
3,314,264 + Psyr_2730 0.87 -1.1
3,314,264 + Psyr_2730 0.87 -0.2
3,314,264 + Psyr_2730 0.87 -2.1
3,314,264 + Psyr_2730 0.87 +0.5
3,314,264 + Psyr_2730 0.87 +1.2
3,314,264 + Psyr_2730 0.87 +0.4
3,314,265 - Psyr_2730 0.87 +0.1
3,314,265 - Psyr_2730 0.87 -0.1
3,314,265 - Psyr_2730 0.87 -0.4
3,314,265 - Psyr_2730 0.87 +1.7
3,314,265 - Psyr_2730 0.87 +0.4
3,314,265 - Psyr_2730 0.87 -0.1
3,314,265 - Psyr_2730 0.87 -0.5
3,314,265 - Psyr_2730 0.87 +2.1
3,314,265 - Psyr_2730 0.87 +3.1
3,314,265 - Psyr_2730 0.87 -0.8
3,314,265 - Psyr_2730 0.87 +1.3
3,314,267 + Psyr_2730 0.87 -2.2
3,314,268 - Psyr_2730 0.87 +3.1
3,314,268 - Psyr_2730 0.87 -2.7
3,314,268 - Psyr_2730 0.87 +0.6
3,314,268 - Psyr_2730 0.87 -0.5
3,314,268 - Psyr_2730 0.87 -0.7
3,314,268 - Psyr_2730 0.87 -0.8
3,314,268 - Psyr_2730 0.87 +0.7
3,314,448 + -1.2
3,314,448 + +1.9
3,314,448 + +1.4
3,314,449 - -0.9
3,314,449 - +0.4
3,314,449 - +1.1
3,314,809 + -1.9
3,314,810 - +0.9
3,315,041 + Psyr_2731 0.23 +0.4
3,315,041 + Psyr_2731 0.23 +1.5
3,315,041 + Psyr_2731 0.23 +2.1
3,315,042 - Psyr_2731 0.23 +0.1
3,315,179 + Psyr_2731 0.34 -1.0
3,315,179 + Psyr_2731 0.34 +0.2
3,315,180 - Psyr_2731 0.34 +0.3
3,315,180 - Psyr_2731 0.34 -0.9
3,315,180 - Psyr_2731 0.34 -0.9
3,315,285 + Psyr_2731 0.43 -1.0
3,315,426 - Psyr_2731 0.54 -0.2
3,315,426 - Psyr_2731 0.54 +1.1
3,315,449 + Psyr_2731 0.56 -0.1
3,315,449 + Psyr_2731 0.56 +1.1
3,315,449 + Psyr_2731 0.56 -0.3
3,315,449 + Psyr_2731 0.56 +2.1
3,315,449 + Psyr_2731 0.56 -0.4
3,315,449 + Psyr_2731 0.56 -0.9
3,315,449 + Psyr_2731 0.56 +0.9
3,315,449 + Psyr_2731 0.56 +0.8
3,315,449 + Psyr_2731 0.56 +0.1
3,315,449 + Psyr_2731 0.56 +0.5
3,315,449 + Psyr_2731 0.56 -1.3
3,315,449 + Psyr_2731 0.56 +0.4
3,315,449 + Psyr_2731 0.56 +1.2
3,315,450 - Psyr_2731 0.56 +0.7
3,315,450 - Psyr_2731 0.56 +0.7
3,315,450 - Psyr_2731 0.56 -0.6
3,315,450 - Psyr_2731 0.56 -1.5
3,315,450 - Psyr_2731 0.56 -1.2
3,315,450 - Psyr_2731 0.56 +2.0
3,315,450 - Psyr_2731 0.56 +0.2
3,315,450 - Psyr_2731 0.56 +0.5
3,315,450 - Psyr_2731 0.56 +0.1
3,315,450 - Psyr_2731 0.56 -0.3
3,315,728 + Psyr_2731 0.79 +1.5
3,315,728 + Psyr_2731 0.79 -0.8
3,315,729 - Psyr_2731 0.79 +1.1
3,315,729 - Psyr_2731 0.79 +0.1
3,315,729 - Psyr_2731 0.79 +0.3
3,316,060 + +1.0
3,316,060 + +1.1
3,316,061 - +1.2
3,316,061 - -0.0
3,316,061 - -0.9
3,316,064 + +0.8
3,316,064 + -0.9
3,316,064 + +4.6
3,316,064 + -1.1
3,316,064 + -0.4
3,316,064 + -2.9
3,316,065 - -3.0
3,316,065 - +0.8
3,316,065 - -3.0
3,316,065 - +0.8
3,316,065 - -1.5
3,316,065 - +0.2
3,316,067 - -0.1
3,316,067 - +1.1
3,316,067 - -0.6
3,316,119 + +0.4
3,316,409 + -1.2
3,316,409 + -0.0
3,316,409 + +2.1
3,316,409 + +1.1
3,316,409 + -2.1
3,316,409 + +2.1
3,316,410 - +0.0
3,316,410 - -0.2
3,316,410 - +0.7
3,316,410 - +1.1
3,316,410 - +0.6
3,316,473 + +2.2
3,316,483 + -1.2
3,316,483 + -0.1
3,316,483 + +0.8
3,316,483 + +3.4
3,316,495 + +3.3
3,316,526 + -2.2
3,316,526 + -0.9
3,316,526 + -1.1
3,316,526 + -0.5
3,316,527 - -0.1
3,316,527 - -0.2
3,316,527 - -2.0
3,316,530 - +0.1
3,316,530 - +0.5
3,316,564 + +0.8
3,316,564 + -0.6
3,316,564 + +0.4
3,316,565 - -1.0
3,316,568 + -0.3
3,316,568 + -0.2
3,316,568 + -0.5
3,316,568 + +0.3
3,316,568 + -0.1
3,316,569 - +2.1
3,316,603 + Psyr_2732 0.11 -0.2
3,316,604 - Psyr_2732 0.12 +0.9
3,316,735 + Psyr_2732 0.25 +2.7
3,316,834 + Psyr_2732 0.36 -0.3
3,316,834 + Psyr_2732 0.36 -0.3
3,316,835 - Psyr_2732 0.36 -0.6
3,316,835 - Psyr_2732 0.36 +1.5
3,316,835 - Psyr_2732 0.36 +1.1
3,316,835 - Psyr_2732 0.36 +1.5
3,316,835 - Psyr_2732 0.36 +0.1
3,316,835 - Psyr_2732 0.36 +1.7
3,316,835 - Psyr_2732 0.36 +2.1
3,316,876 + Psyr_2732 0.40 +0.8

Or see this region's nucleotide sequence