Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1756

Experiment: KB with Gossypetin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1755 and Psyr_1756 are separated by 1 nucleotidesPsyr_1756 and Psyr_1757 are separated by 1 nucleotides Psyr_1755: Psyr_1755 - ABC transporter, at 1,993,795 to 1,995,405 _1755 Psyr_1756: Psyr_1756 - Binding-protein-dependent transport systems inner membrane component, at 1,995,407 to 1,996,426 _1756 Psyr_1757: Psyr_1757 - Binding-protein-dependent transport systems inner membrane component, at 1,996,428 to 1,997,501 _1757 Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1994.492 kb on - strand, within Psyr_1755at 1994.492 kb on - strand, within Psyr_1755at 1994.722 kb on + strand, within Psyr_1755at 1994.722 kb on + strand, within Psyr_1755at 1994.722 kb on + strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.734 kb on + strand, within Psyr_1755at 1994.735 kb on - strand, within Psyr_1755at 1994.744 kb on - strand, within Psyr_1755at 1995.408 kb on + strandat 1995.408 kb on + strandat 1995.409 kb on - strandat 1995.722 kb on + strand, within Psyr_1756at 1995.722 kb on + strand, within Psyr_1756at 1995.723 kb on - strand, within Psyr_1756at 1995.726 kb on + strand, within Psyr_1756at 1995.830 kb on + strand, within Psyr_1756at 1995.830 kb on + strand, within Psyr_1756at 1995.831 kb on - strand, within Psyr_1756at 1995.831 kb on - strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.859 kb on - strand, within Psyr_1756at 1995.925 kb on - strand, within Psyr_1756at 1995.925 kb on - strand, within Psyr_1756at 1995.925 kb on - strand, within Psyr_1756at 1996.014 kb on + strand, within Psyr_1756at 1996.014 kb on + strand, within Psyr_1756at 1996.015 kb on - strand, within Psyr_1756at 1996.015 kb on - strand, within Psyr_1756at 1996.107 kb on + strand, within Psyr_1756at 1996.107 kb on + strand, within Psyr_1756at 1996.108 kb on - strand, within Psyr_1756at 1996.108 kb on - strand, within Psyr_1756at 1996.122 kb on + strand, within Psyr_1756at 1996.186 kb on - strand, within Psyr_1756at 1996.186 kb on - strand, within Psyr_1756at 1996.197 kb on + strand, within Psyr_1756at 1996.197 kb on + strand, within Psyr_1756at 1996.197 kb on + strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756at 1996.427 kb on - strandat 1996.465 kb on - strandat 1996.474 kb on + strandat 1996.474 kb on + strandat 1996.474 kb on + strandat 1996.474 kb on + strandat 1996.475 kb on - strandat 1996.475 kb on - strandat 1996.753 kb on + strand, within Psyr_1757at 1996.753 kb on + strand, within Psyr_1757at 1996.753 kb on + strand, within Psyr_1757at 1996.753 kb on + strand, within Psyr_1757at 1996.753 kb on + strand, within Psyr_1757at 1996.754 kb on - strand, within Psyr_1757at 1996.754 kb on - strand, within Psyr_1757at 1996.858 kb on + strand, within Psyr_1757at 1996.859 kb on - strand, within Psyr_1757at 1996.859 kb on - strand, within Psyr_1757at 1996.866 kb on + strand, within Psyr_1757at 1996.894 kb on + strand, within Psyr_1757at 1996.895 kb on - strand, within Psyr_1757at 1996.937 kb on - strand, within Psyr_1757at 1996.937 kb on - strand, within Psyr_1757at 1997.025 kb on + strand, within Psyr_1757at 1997.026 kb on - strand, within Psyr_1757at 1997.026 kb on - strand, within Psyr_1757at 1997.086 kb on + strand, within Psyr_1757at 1997.086 kb on + strand, within Psyr_1757at 1997.086 kb on + strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.200 kb on + strand, within Psyr_1757at 1997.201 kb on - strand, within Psyr_1757at 1997.201 kb on - strand, within Psyr_1757at 1997.201 kb on - strand, within Psyr_1757at 1997.251 kb on + strand, within Psyr_1757at 1997.251 kb on + strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypetin 10 mM
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1,994,492 - Psyr_1755 0.43 -0.3
1,994,492 - Psyr_1755 0.43 -1.0
1,994,722 + Psyr_1755 0.58 +0.3
1,994,722 + Psyr_1755 0.58 +0.4
1,994,722 + Psyr_1755 0.58 -0.8
1,994,723 - Psyr_1755 0.58 +1.3
1,994,723 - Psyr_1755 0.58 -0.2
1,994,723 - Psyr_1755 0.58 +0.1
1,994,723 - Psyr_1755 0.58 -0.4
1,994,723 - Psyr_1755 0.58 -0.8
1,994,734 + Psyr_1755 0.58 +0.4
1,994,735 - Psyr_1755 0.58 -0.1
1,994,744 - Psyr_1755 0.59 -0.9
1,995,408 + -1.4
1,995,408 + -0.6
1,995,409 - -1.9
1,995,722 + Psyr_1756 0.31 +0.5
1,995,722 + Psyr_1756 0.31 -0.1
1,995,723 - Psyr_1756 0.31 -0.1
1,995,726 + Psyr_1756 0.31 +1.6
1,995,830 + Psyr_1756 0.41 -0.6
1,995,830 + Psyr_1756 0.41 +0.4
1,995,831 - Psyr_1756 0.42 -0.1
1,995,831 - Psyr_1756 0.42 -1.4
1,995,858 + Psyr_1756 0.44 +0.1
1,995,858 + Psyr_1756 0.44 -1.8
1,995,858 + Psyr_1756 0.44 +0.6
1,995,858 + Psyr_1756 0.44 -0.5
1,995,858 + Psyr_1756 0.44 -1.3
1,995,858 + Psyr_1756 0.44 -0.7
1,995,858 + Psyr_1756 0.44 -0.6
1,995,858 + Psyr_1756 0.44 -2.8
1,995,858 + Psyr_1756 0.44 -2.1
1,995,859 - Psyr_1756 0.44 -1.1
1,995,925 - Psyr_1756 0.51 +0.7
1,995,925 - Psyr_1756 0.51 -0.1
1,995,925 - Psyr_1756 0.51 -0.0
1,996,014 + Psyr_1756 0.60 -1.1
1,996,014 + Psyr_1756 0.60 -0.6
1,996,015 - Psyr_1756 0.60 -0.3
1,996,015 - Psyr_1756 0.60 -0.6
1,996,107 + Psyr_1756 0.69 -0.3
1,996,107 + Psyr_1756 0.69 -1.0
1,996,108 - Psyr_1756 0.69 -0.3
1,996,108 - Psyr_1756 0.69 -1.2
1,996,122 + Psyr_1756 0.70 -0.7
1,996,186 - Psyr_1756 0.76 -0.9
1,996,186 - Psyr_1756 0.76 -0.1
1,996,197 + Psyr_1756 0.77 -1.6
1,996,197 + Psyr_1756 0.77 +2.5
1,996,197 + Psyr_1756 0.77 +0.4
1,996,198 - Psyr_1756 0.78 -1.8
1,996,198 - Psyr_1756 0.78 -0.1
1,996,198 - Psyr_1756 0.78 -0.4
1,996,198 - Psyr_1756 0.78 +0.3
1,996,198 - Psyr_1756 0.78 -1.4
1,996,427 - +1.1
1,996,465 - -1.5
1,996,474 + -1.0
1,996,474 + -0.1
1,996,474 + +0.1
1,996,474 + -0.9
1,996,475 - -0.4
1,996,475 - -0.4
1,996,753 + Psyr_1757 0.30 +0.7
1,996,753 + Psyr_1757 0.30 -0.2
1,996,753 + Psyr_1757 0.30 -0.3
1,996,753 + Psyr_1757 0.30 -1.7
1,996,753 + Psyr_1757 0.30 -0.2
1,996,754 - Psyr_1757 0.30 -0.5
1,996,754 - Psyr_1757 0.30 -0.3
1,996,858 + Psyr_1757 0.40 -0.2
1,996,859 - Psyr_1757 0.40 +0.4
1,996,859 - Psyr_1757 0.40 -1.7
1,996,866 + Psyr_1757 0.41 -0.4
1,996,894 + Psyr_1757 0.43 +0.2
1,996,895 - Psyr_1757 0.43 -1.1
1,996,937 - Psyr_1757 0.47 +0.6
1,996,937 - Psyr_1757 0.47 +0.0
1,997,025 + Psyr_1757 0.56 +0.0
1,997,026 - Psyr_1757 0.56 -2.2
1,997,026 - Psyr_1757 0.56 -3.2
1,997,086 + Psyr_1757 0.61 -0.2
1,997,086 + Psyr_1757 0.61 -0.8
1,997,086 + Psyr_1757 0.61 +1.5
1,997,087 - Psyr_1757 0.61 -1.1
1,997,087 - Psyr_1757 0.61 -0.1
1,997,087 - Psyr_1757 0.61 -0.1
1,997,087 - Psyr_1757 0.61 -0.4
1,997,087 - Psyr_1757 0.61 -0.2
1,997,087 - Psyr_1757 0.61 -0.5
1,997,087 - Psyr_1757 0.61 +0.4
1,997,200 + Psyr_1757 0.72 -0.9
1,997,201 - Psyr_1757 0.72 +0.4
1,997,201 - Psyr_1757 0.72 +0.9
1,997,201 - Psyr_1757 0.72 -0.3
1,997,251 + Psyr_1757 0.77 -0.6
1,997,251 + Psyr_1757 0.77 -0.4
1,997,252 - Psyr_1757 0.77 -1.1
1,997,252 - Psyr_1757 0.77 -1.5
1,997,252 - Psyr_1757 0.77 +0.0
1,997,252 - Psyr_1757 0.77 +0.4
1,997,252 - Psyr_1757 0.77 -0.8

Or see this region's nucleotide sequence