Experiment: KB with Gossypetin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0350 and Psyr_0351 overlap by 4 nucleotides Psyr_0351 and Psyr_0352 are separated by 384 nucleotides
Psyr_0350: Psyr_0350 - ABC transporter, at 374,091 to 375,221
_0350
Psyr_0351: Psyr_0351 - NLPA lipoprotein, at 375,218 to 376,006
_0351
Psyr_0352: Psyr_0352 - monooxygenase, DszA family, at 376,391 to 377,749
_0352
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 374.508 kb on - strand, within Psyr_0350 at 375.094 kb on + strand, within Psyr_0350 at 375.094 kb on + strand, within Psyr_0350 at 375.095 kb on - strand, within Psyr_0350 at 375.294 kb on + strand at 375.294 kb on + strand at 375.295 kb on - strand at 375.363 kb on + strand, within Psyr_0351 at 375.363 kb on + strand, within Psyr_0351 at 375.363 kb on + strand, within Psyr_0351 at 375.363 kb on + strand, within Psyr_0351 at 375.364 kb on - strand, within Psyr_0351 at 375.364 kb on - strand, within Psyr_0351 at 375.364 kb on - strand, within Psyr_0351 at 375.364 kb on - strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.433 kb on - strand, within Psyr_0351 at 375.468 kb on + strand, within Psyr_0351 at 375.646 kb on + strand, within Psyr_0351 at 375.646 kb on + strand, within Psyr_0351 at 375.647 kb on - strand, within Psyr_0351 at 375.678 kb on + strand, within Psyr_0351 at 375.678 kb on + strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.690 kb on + strand, within Psyr_0351 at 375.786 kb on + strand, within Psyr_0351 at 375.786 kb on + strand, within Psyr_0351 at 375.787 kb on - strand, within Psyr_0351 at 375.787 kb on - strand, within Psyr_0351 at 376.057 kb on - strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.079 kb on - strand at 376.079 kb on - strand at 376.079 kb on - strand at 376.123 kb on + strand at 376.123 kb on + strand at 376.123 kb on + strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.182 kb on + strand at 376.182 kb on + strand at 376.182 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.304 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.397 kb on - strand at 376.494 kb on + strand at 376.494 kb on + strand at 376.494 kb on + strand at 376.494 kb on + strand at 376.494 kb on + strand at 376.495 kb on - strand at 376.545 kb on + strand, within Psyr_0352 at 376.546 kb on - strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.657 kb on - strand, within Psyr_0352 at 376.657 kb on - strand, within Psyr_0352 at 376.657 kb on - strand, within Psyr_0352 at 376.657 kb on - strand, within Psyr_0352 at 376.756 kb on - strand, within Psyr_0352
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Gossypetin 10 mM remove 374,508 - Psyr_0350 0.37 +1.2 375,094 + Psyr_0350 0.89 -1.0 375,094 + Psyr_0350 0.89 -0.5 375,095 - Psyr_0350 0.89 -0.5 375,294 + -0.7 375,294 + +3.6 375,295 - +0.4 375,363 + Psyr_0351 0.18 -0.9 375,363 + Psyr_0351 0.18 -0.8 375,363 + Psyr_0351 0.18 -0.9 375,363 + Psyr_0351 0.18 -0.9 375,364 - Psyr_0351 0.19 +0.3 375,364 - Psyr_0351 0.19 -0.9 375,364 - Psyr_0351 0.19 +0.1 375,364 - Psyr_0351 0.19 +1.0 375,432 + Psyr_0351 0.27 -0.0 375,432 + Psyr_0351 0.27 +1.4 375,432 + Psyr_0351 0.27 -1.3 375,432 + Psyr_0351 0.27 +0.7 375,433 - Psyr_0351 0.27 +0.8 375,468 + Psyr_0351 0.32 +0.1 375,646 + Psyr_0351 0.54 +0.2 375,646 + Psyr_0351 0.54 +0.8 375,647 - Psyr_0351 0.54 -1.1 375,678 + Psyr_0351 0.58 -2.2 375,678 + Psyr_0351 0.58 -0.4 375,679 - Psyr_0351 0.58 +0.4 375,679 - Psyr_0351 0.58 -0.1 375,679 - Psyr_0351 0.58 -1.4 375,679 - Psyr_0351 0.58 -0.5 375,679 - Psyr_0351 0.58 -1.5 375,690 + Psyr_0351 0.60 +1.0 375,786 + Psyr_0351 0.72 -0.6 375,786 + Psyr_0351 0.72 -0.6 375,787 - Psyr_0351 0.72 -1.3 375,787 - Psyr_0351 0.72 -1.3 376,057 - -0.2 376,078 + +0.0 376,078 + -0.6 376,078 + -1.2 376,078 + -0.5 376,078 + +2.7 376,079 - +0.3 376,079 - +2.2 376,079 - +0.4 376,123 + +0.2 376,123 + +0.7 376,123 + -0.0 376,124 - +0.9 376,124 - +1.4 376,124 - -0.7 376,124 - +2.0 376,124 - -0.1 376,182 + -0.3 376,182 + -0.3 376,182 + -0.3 376,259 + -0.5 376,259 + -0.9 376,259 + +3.4 376,259 + +0.2 376,259 + +2.6 376,259 + -0.2 376,259 + +0.6 376,259 + -0.6 376,259 + +0.0 376,259 + +0.2 376,259 + -0.1 376,259 + -0.7 376,260 - +1.0 376,260 - -1.3 376,260 - -0.3 376,260 - -1.8 376,260 - +0.2 376,260 - +0.0 376,260 - -0.2 376,260 - +0.3 376,260 - +1.2 376,304 + -0.6 376,396 + +0.2 376,396 + +0.9 376,396 + -0.2 376,396 + -0.8 376,396 + -0.2 376,396 + -0.5 376,396 + -0.1 376,396 + -2.3 376,397 - -1.8 376,494 + +0.4 376,494 + +0.6 376,494 + -0.7 376,494 + -0.3 376,494 + +1.2 376,495 - -0.7 376,545 + Psyr_0352 0.11 -0.2 376,546 - Psyr_0352 0.11 -1.9 376,656 + Psyr_0352 0.19 +0.2 376,656 + Psyr_0352 0.19 -0.1 376,656 + Psyr_0352 0.19 -0.8 376,656 + Psyr_0352 0.19 +0.1 376,656 + Psyr_0352 0.19 -1.9 376,656 + Psyr_0352 0.19 -0.8 376,657 - Psyr_0352 0.20 +0.5 376,657 - Psyr_0352 0.20 +0.3 376,657 - Psyr_0352 0.20 -0.5 376,657 - Psyr_0352 0.20 -0.4 376,756 - Psyr_0352 0.27 -0.1
Or see this region's nucleotide sequence