Experiment: KB with Gossypetin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0311 and Psyr_0312 are separated by 119 nucleotides Psyr_0312 and Psyr_0313 are separated by 255 nucleotides Psyr_0313 and Psyr_0314 are separated by 130 nucleotides Psyr_0314 and Psyr_0315 are separated by 6 nucleotides
Psyr_0311: Psyr_0311 - CDS, at 331,803 to 332,150
_0311
Psyr_0312: Psyr_0312 - hypothetical protein, at 332,270 to 332,632
_0312
Psyr_0313: Psyr_0313 - Zinc-containing alcohol dehydrogenase superfamily, at 332,888 to 333,874
_0313
Psyr_0314: Psyr_0314 - Flagellar basal body-associated protein FliL, at 334,005 to 334,412
_0314
Psyr_0315: Psyr_0315 - Protein of unknown function DUF589, at 334,419 to 334,868
_0315
Position (kb) 332
333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 332.230 kb on + strand at 332.230 kb on + strand at 332.233 kb on + strand at 332.264 kb on + strand at 332.338 kb on - strand, within Psyr_0312 at 332.356 kb on + strand, within Psyr_0312 at 332.356 kb on + strand, within Psyr_0312 at 332.356 kb on + strand, within Psyr_0312 at 332.359 kb on + strand, within Psyr_0312 at 332.360 kb on - strand, within Psyr_0312 at 332.362 kb on - strand, within Psyr_0312 at 332.452 kb on - strand, within Psyr_0312 at 332.452 kb on - strand, within Psyr_0312 at 332.452 kb on - strand, within Psyr_0312 at 332.488 kb on + strand, within Psyr_0312 at 332.495 kb on + strand, within Psyr_0312 at 332.495 kb on + strand, within Psyr_0312 at 332.550 kb on + strand, within Psyr_0312 at 332.550 kb on + strand, within Psyr_0312 at 332.551 kb on - strand, within Psyr_0312 at 332.551 kb on - strand, within Psyr_0312 at 332.565 kb on - strand, within Psyr_0312 at 332.565 kb on - strand, within Psyr_0312 at 332.637 kb on + strand at 332.645 kb on - strand at 332.647 kb on + strand at 332.647 kb on + strand at 332.647 kb on + strand at 332.648 kb on - strand at 332.648 kb on - strand at 332.648 kb on - strand at 332.709 kb on + strand at 332.709 kb on + strand at 332.712 kb on + strand at 332.712 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.717 kb on - strand at 332.749 kb on + strand at 332.749 kb on + strand at 332.772 kb on + strand at 332.772 kb on + strand at 332.773 kb on - strand at 332.832 kb on + strand at 332.878 kb on + strand at 332.879 kb on - strand at 332.882 kb on + strand at 333.215 kb on + strand, within Psyr_0313 at 333.216 kb on - strand, within Psyr_0313 at 333.216 kb on - strand, within Psyr_0313 at 333.216 kb on - strand, within Psyr_0313 at 333.237 kb on + strand, within Psyr_0313 at 333.238 kb on - strand, within Psyr_0313 at 333.238 kb on - strand, within Psyr_0313 at 333.238 kb on - strand, within Psyr_0313 at 333.238 kb on - strand, within Psyr_0313 at 333.303 kb on + strand, within Psyr_0313 at 333.303 kb on + strand, within Psyr_0313 at 333.303 kb on + strand, within Psyr_0313 at 333.303 kb on + strand, within Psyr_0313 at 333.303 kb on + strand, within Psyr_0313 at 333.304 kb on - strand, within Psyr_0313 at 333.304 kb on - strand, within Psyr_0313 at 333.304 kb on - strand, within Psyr_0313 at 333.304 kb on - strand, within Psyr_0313 at 333.440 kb on + strand, within Psyr_0313 at 333.567 kb on + strand, within Psyr_0313 at 333.567 kb on + strand, within Psyr_0313 at 333.568 kb on - strand, within Psyr_0313 at 333.568 kb on - strand, within Psyr_0313 at 333.568 kb on - strand, within Psyr_0313 at 333.723 kb on + strand, within Psyr_0313 at 333.723 kb on + strand, within Psyr_0313 at 333.724 kb on - strand, within Psyr_0313 at 333.724 kb on - strand, within Psyr_0313 at 333.724 kb on - strand, within Psyr_0313 at 333.724 kb on - strand, within Psyr_0313 at 333.861 kb on - strand at 333.861 kb on - strand at 333.914 kb on + strand at 333.914 kb on + strand at 333.915 kb on - strand at 333.915 kb on - strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.963 kb on + strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.964 kb on - strand at 333.970 kb on + strand at 333.970 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.975 kb on + strand at 333.976 kb on - strand at 333.976 kb on - strand at 333.976 kb on - strand at 333.976 kb on - strand at 333.976 kb on - strand at 333.989 kb on + strand at 333.989 kb on + strand at 333.990 kb on - strand at 333.992 kb on + strand at 334.098 kb on + strand, within Psyr_0314 at 334.098 kb on + strand, within Psyr_0314 at 334.098 kb on + strand, within Psyr_0314 at 334.098 kb on + strand, within Psyr_0314 at 334.098 kb on + strand, within Psyr_0314 at 334.099 kb on - strand, within Psyr_0314 at 334.099 kb on - strand, within Psyr_0314 at 334.099 kb on - strand, within Psyr_0314 at 334.099 kb on - strand, within Psyr_0314 at 334.131 kb on + strand, within Psyr_0314 at 334.131 kb on + strand, within Psyr_0314 at 334.131 kb on + strand, within Psyr_0314 at 334.131 kb on + strand, within Psyr_0314 at 334.132 kb on - strand, within Psyr_0314 at 334.132 kb on - strand, within Psyr_0314 at 334.132 kb on - strand, within Psyr_0314 at 334.132 kb on - strand, within Psyr_0314 at 334.132 kb on - strand, within Psyr_0314 at 334.164 kb on + strand, within Psyr_0314 at 334.164 kb on + strand, within Psyr_0314 at 334.164 kb on + strand, within Psyr_0314 at 334.164 kb on + strand, within Psyr_0314 at 334.164 kb on + strand, within Psyr_0314 at 334.165 kb on - strand, within Psyr_0314 at 334.165 kb on - strand, within Psyr_0314 at 334.165 kb on - strand, within Psyr_0314 at 334.165 kb on - strand, within Psyr_0314 at 334.394 kb on + strand at 334.395 kb on - strand at 334.531 kb on + strand, within Psyr_0315 at 334.661 kb on - strand, within Psyr_0315 at 334.720 kb on + strand, within Psyr_0315 at 334.774 kb on + strand, within Psyr_0315 at 334.774 kb on + strand, within Psyr_0315 at 334.774 kb on + strand, within Psyr_0315 at 334.774 kb on + strand, within Psyr_0315 at 334.775 kb on - strand, within Psyr_0315
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Gossypetin 10 mM remove 332,230 + +0.3 332,230 + +0.0 332,233 + +0.1 332,264 + -1.2 332,338 - Psyr_0312 0.19 +1.3 332,356 + Psyr_0312 0.24 -1.6 332,356 + Psyr_0312 0.24 +0.4 332,356 + Psyr_0312 0.24 -1.0 332,359 + Psyr_0312 0.25 -1.2 332,360 - Psyr_0312 0.25 -0.0 332,362 - Psyr_0312 0.25 +0.5 332,452 - Psyr_0312 0.50 -1.5 332,452 - Psyr_0312 0.50 +0.6 332,452 - Psyr_0312 0.50 -0.2 332,488 + Psyr_0312 0.60 -0.2 332,495 + Psyr_0312 0.62 -0.6 332,495 + Psyr_0312 0.62 -0.6 332,550 + Psyr_0312 0.77 -1.3 332,550 + Psyr_0312 0.77 -0.1 332,551 - Psyr_0312 0.77 -1.7 332,551 - Psyr_0312 0.77 -1.6 332,565 - Psyr_0312 0.81 -1.2 332,565 - Psyr_0312 0.81 -0.1 332,637 + -1.3 332,645 - -0.2 332,647 + -0.6 332,647 + -0.9 332,647 + -1.0 332,648 - -0.6 332,648 - +1.5 332,648 - -0.4 332,709 + +0.3 332,709 + +0.1 332,712 + +1.0 332,712 + -0.3 332,716 + +0.8 332,716 + -0.2 332,716 + -0.6 332,716 + +0.3 332,717 - +0.5 332,749 + +2.3 332,749 + -0.1 332,772 + +1.8 332,772 + +0.6 332,773 - +2.8 332,832 + +0.5 332,878 + +1.5 332,879 - -0.4 332,882 + +1.8 333,215 + Psyr_0313 0.33 +0.0 333,216 - Psyr_0313 0.33 -0.2 333,216 - Psyr_0313 0.33 -0.2 333,216 - Psyr_0313 0.33 -0.3 333,237 + Psyr_0313 0.35 +4.2 333,238 - Psyr_0313 0.35 -0.3 333,238 - Psyr_0313 0.35 +0.2 333,238 - Psyr_0313 0.35 +1.0 333,238 - Psyr_0313 0.35 +0.2 333,303 + Psyr_0313 0.42 +0.4 333,303 + Psyr_0313 0.42 -0.2 333,303 + Psyr_0313 0.42 -0.6 333,303 + Psyr_0313 0.42 -0.4 333,303 + Psyr_0313 0.42 +2.6 333,304 - Psyr_0313 0.42 -0.0 333,304 - Psyr_0313 0.42 -0.3 333,304 - Psyr_0313 0.42 -0.8 333,304 - Psyr_0313 0.42 -3.0 333,440 + Psyr_0313 0.56 +0.4 333,567 + Psyr_0313 0.69 -0.2 333,567 + Psyr_0313 0.69 -0.3 333,568 - Psyr_0313 0.69 +0.2 333,568 - Psyr_0313 0.69 +0.2 333,568 - Psyr_0313 0.69 +0.2 333,723 + Psyr_0313 0.85 +0.8 333,723 + Psyr_0313 0.85 +0.0 333,724 - Psyr_0313 0.85 -1.1 333,724 - Psyr_0313 0.85 +0.7 333,724 - Psyr_0313 0.85 +1.5 333,724 - Psyr_0313 0.85 -0.5 333,861 - +1.2 333,861 - +0.5 333,914 + +0.2 333,914 + +1.7 333,915 - -1.5 333,915 - -0.2 333,963 + +0.8 333,963 + +2.2 333,963 + -0.3 333,963 + -0.9 333,963 + +0.6 333,963 + -0.7 333,963 + -0.1 333,963 + -0.1 333,963 + +0.0 333,963 + -1.9 333,963 + +1.7 333,963 + -1.7 333,963 + -1.1 333,963 + -0.6 333,964 - -0.1 333,964 - +2.6 333,964 - -0.5 333,964 - -0.8 333,964 - -0.5 333,964 - +1.1 333,964 - +1.8 333,964 - -0.2 333,964 - +1.2 333,964 - +0.3 333,964 - +0.3 333,964 - +2.8 333,964 - +0.9 333,964 - -0.8 333,964 - -1.3 333,964 - +0.5 333,964 - +0.0 333,964 - -0.7 333,964 - +0.2 333,964 - +0.5 333,964 - +0.2 333,964 - +0.5 333,964 - +0.2 333,964 - +0.4 333,964 - -0.2 333,970 + +0.5 333,970 + -1.0 333,975 + +1.1 333,975 + -1.6 333,975 + -2.3 333,975 + +0.1 333,975 + +0.4 333,975 + +1.9 333,975 + -2.0 333,975 + -0.3 333,975 + +1.5 333,975 + +0.5 333,975 + -0.4 333,975 + -0.3 333,976 - +3.6 333,976 - -0.5 333,976 - +0.9 333,976 - -0.6 333,976 - -0.2 333,989 + -0.2 333,989 + +0.5 333,990 - +1.7 333,992 + +1.5 334,098 + Psyr_0314 0.23 -0.9 334,098 + Psyr_0314 0.23 -1.1 334,098 + Psyr_0314 0.23 +1.4 334,098 + Psyr_0314 0.23 -2.2 334,098 + Psyr_0314 0.23 +1.0 334,099 - Psyr_0314 0.23 -0.8 334,099 - Psyr_0314 0.23 +1.8 334,099 - Psyr_0314 0.23 -0.6 334,099 - Psyr_0314 0.23 +1.1 334,131 + Psyr_0314 0.31 +1.2 334,131 + Psyr_0314 0.31 -1.7 334,131 + Psyr_0314 0.31 -0.7 334,131 + Psyr_0314 0.31 -1.8 334,132 - Psyr_0314 0.31 -0.5 334,132 - Psyr_0314 0.31 -1.1 334,132 - Psyr_0314 0.31 +2.6 334,132 - Psyr_0314 0.31 -0.4 334,132 - Psyr_0314 0.31 -0.9 334,164 + Psyr_0314 0.39 -0.3 334,164 + Psyr_0314 0.39 +0.2 334,164 + Psyr_0314 0.39 -0.4 334,164 + Psyr_0314 0.39 -0.2 334,164 + Psyr_0314 0.39 -0.8 334,165 - Psyr_0314 0.39 +0.5 334,165 - Psyr_0314 0.39 +0.7 334,165 - Psyr_0314 0.39 -0.1 334,165 - Psyr_0314 0.39 -0.7 334,394 + -0.7 334,395 - +1.5 334,531 + Psyr_0315 0.25 +0.7 334,661 - Psyr_0315 0.54 -0.4 334,720 + Psyr_0315 0.67 -0.1 334,774 + Psyr_0315 0.79 +0.7 334,774 + Psyr_0315 0.79 -0.1 334,774 + Psyr_0315 0.79 -0.1 334,774 + Psyr_0315 0.79 +1.2 334,775 - Psyr_0315 0.79 +0.8
Or see this region's nucleotide sequence