Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_948 and HP15_949 are separated by 120 nucleotides HP15_949 and HP15_950 overlap by 4 nucleotides HP15_950 and HP15_951 are separated by 107 nucleotides
HP15_948: HP15_948 - conserved hypothetical protein, secreted, at 964,950 to 965,378
_948
HP15_949: HP15_949 - conserved hypothetical protein, at 965,499 to 966,227
_949
HP15_950: HP15_950 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 966,224 to 966,832
_950
HP15_951: HP15_951 - transcriptional regulator, AraC family protein, at 966,940 to 967,950
_951
Position (kb)
966
967 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 965.282 kb on + strand, within HP15_948 at 965.282 kb on - strand, within HP15_948 at 965.314 kb on - strand, within HP15_948 at 965.409 kb on - strand at 965.518 kb on + strand at 965.526 kb on - strand at 965.545 kb on + strand at 965.553 kb on - strand at 965.589 kb on + strand, within HP15_949 at 965.605 kb on + strand, within HP15_949 at 965.613 kb on - strand, within HP15_949 at 965.615 kb on + strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.857 kb on + strand, within HP15_949 at 965.865 kb on - strand, within HP15_949 at 965.966 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.017 kb on - strand, within HP15_949 at 966.051 kb on - strand, within HP15_949 at 966.056 kb on - strand, within HP15_949 at 966.239 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.258 kb on - strand at 966.258 kb on - strand at 966.427 kb on + strand, within HP15_950 at 966.580 kb on + strand, within HP15_950 at 966.643 kb on - strand, within HP15_950 at 966.754 kb on + strand, within HP15_950 at 966.772 kb on - strand at 966.772 kb on - strand at 966.819 kb on + strand at 966.917 kb on - strand at 966.917 kb on - strand at 966.917 kb on - strand at 966.917 kb on - strand at 966.942 kb on + strand at 967.106 kb on + strand, within HP15_951 at 967.134 kb on - strand, within HP15_951 at 967.135 kb on - strand, within HP15_951 at 967.188 kb on - strand, within HP15_951 at 967.212 kb on - strand, within HP15_951 at 967.217 kb on - strand, within HP15_951 at 967.294 kb on + strand, within HP15_951 at 967.339 kb on - strand, within HP15_951 at 967.348 kb on + strand, within HP15_951 at 967.351 kb on - strand, within HP15_951 at 967.397 kb on - strand, within HP15_951 at 967.403 kb on + strand, within HP15_951 at 967.456 kb on + strand, within HP15_951 at 967.515 kb on - strand, within HP15_951 at 967.519 kb on + strand, within HP15_951 at 967.519 kb on + strand, within HP15_951 at 967.520 kb on - strand, within HP15_951 at 967.520 kb on - strand, within HP15_951 at 967.527 kb on - strand, within HP15_951 at 967.545 kb on + strand, within HP15_951 at 967.669 kb on - strand, within HP15_951 at 967.685 kb on - strand, within HP15_951 at 967.782 kb on - strand, within HP15_951 at 967.819 kb on + strand, within HP15_951
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 965,282 + HP15_948 0.77 +1.0 965,282 - HP15_948 0.77 -1.2 965,314 - HP15_948 0.85 -0.8 965,409 - -0.2 965,518 + -0.7 965,526 - -0.3 965,545 + +0.4 965,553 - +0.8 965,589 + HP15_949 0.12 +0.9 965,605 + HP15_949 0.15 +1.9 965,613 - HP15_949 0.16 -0.8 965,615 + HP15_949 0.16 -0.2 965,623 - HP15_949 0.17 +0.4 965,623 - HP15_949 0.17 -0.4 965,857 + HP15_949 0.49 +0.7 965,865 - HP15_949 0.50 +1.1 965,966 + HP15_949 0.64 +1.0 966,009 + HP15_949 0.70 +0.8 966,009 + HP15_949 0.70 -2.2 966,009 + HP15_949 0.70 -0.3 966,009 + HP15_949 0.70 +1.1 966,009 + HP15_949 0.70 -1.1 966,009 + HP15_949 0.70 +0.9 966,009 + HP15_949 0.70 -0.2 966,009 + HP15_949 0.70 -0.7 966,009 + HP15_949 0.70 +0.2 966,009 + HP15_949 0.70 -1.7 966,017 - HP15_949 0.71 +0.3 966,051 - HP15_949 0.76 -0.7 966,056 - HP15_949 0.76 +0.8 966,239 + +0.7 966,250 + +0.1 966,250 + +0.5 966,250 + -0.6 966,250 + -0.4 966,250 + -1.0 966,258 - +0.4 966,258 - -0.4 966,427 + HP15_950 0.33 -0.2 966,580 + HP15_950 0.58 +1.3 966,643 - HP15_950 0.69 -1.8 966,754 + HP15_950 0.87 -0.4 966,772 - -0.4 966,772 - +1.3 966,819 + -0.0 966,917 - +0.3 966,917 - -0.1 966,917 - +1.4 966,917 - +0.3 966,942 + +0.2 967,106 + HP15_951 0.16 -2.1 967,134 - HP15_951 0.19 +0.4 967,135 - HP15_951 0.19 +0.9 967,188 - HP15_951 0.25 -0.5 967,212 - HP15_951 0.27 -0.7 967,217 - HP15_951 0.27 -0.5 967,294 + HP15_951 0.35 +0.4 967,339 - HP15_951 0.39 +1.0 967,348 + HP15_951 0.40 -0.6 967,351 - HP15_951 0.41 +0.6 967,397 - HP15_951 0.45 -0.4 967,403 + HP15_951 0.46 -0.6 967,456 + HP15_951 0.51 -1.0 967,515 - HP15_951 0.57 +0.2 967,519 + HP15_951 0.57 -0.2 967,519 + HP15_951 0.57 +1.0 967,520 - HP15_951 0.57 +0.9 967,520 - HP15_951 0.57 +0.9 967,527 - HP15_951 0.58 -1.9 967,545 + HP15_951 0.60 +1.3 967,669 - HP15_951 0.72 -0.7 967,685 - HP15_951 0.74 +0.4 967,782 - HP15_951 0.83 -0.5 967,819 + HP15_951 0.87 +0.6
Or see this region's nucleotide sequence