Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_547 and HP15_548 are separated by 108 nucleotides HP15_548 and HP15_549 are separated by 32 nucleotides HP15_549 and HP15_550 are separated by 45 nucleotides HP15_550 and HP15_551 overlap by 1 nucleotides
HP15_547: HP15_547 - ubiquinol-cytochrome c reductase, cytochrome c1, at 568,429 to 569,184
_547
HP15_548: HP15_548 - glutathione S-transferase, N-terminal domain protein, at 569,293 to 569,922
_548
HP15_549: HP15_549 - stringent starvation protein B, at 569,955 to 570,398
_549
HP15_550: HP15_550 - phosphoheptose isomerase, at 570,444 to 571,046
_550
HP15_551: HP15_551 - hypothetical protein, at 571,046 to 571,411
_551
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1 at 570.008 kb on - strand, within HP15_549 at 570.041 kb on - strand, within HP15_549 at 570.094 kb on - strand, within HP15_549 at 570.273 kb on + strand, within HP15_549 at 570.288 kb on - strand, within HP15_549 at 570.378 kb on + strand at 570.490 kb on - strand at 570.508 kb on + strand, within HP15_550 at 570.508 kb on + strand, within HP15_550 at 570.516 kb on - strand, within HP15_550 at 570.701 kb on - strand, within HP15_550 at 570.725 kb on - strand, within HP15_550 at 570.806 kb on + strand, within HP15_550 at 571.123 kb on - strand, within HP15_551 at 571.262 kb on + strand, within HP15_551 at 571.338 kb on - strand, within HP15_551 at 571.358 kb on + strand, within HP15_551 at 571.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 570,008 - HP15_549 0.12 +0.5 570,041 - HP15_549 0.19 -1.2 570,094 - HP15_549 0.31 -1.8 570,273 + HP15_549 0.72 -1.4 570,288 - HP15_549 0.75 +1.0 570,378 + -0.3 570,490 - -0.5 570,508 + HP15_550 0.11 +1.6 570,508 + HP15_550 0.11 +1.2 570,516 - HP15_550 0.12 -0.3 570,701 - HP15_550 0.43 +1.6 570,725 - HP15_550 0.47 +1.7 570,806 + HP15_550 0.60 +0.5 571,123 - HP15_551 0.21 +1.2 571,262 + HP15_551 0.59 +0.5 571,338 - HP15_551 0.80 -0.0 571,358 + HP15_551 0.85 +1.1 571,376 - -0.6
Or see this region's nucleotide sequence