Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g172 and HP15_p187g173 overlap by 4 nucleotides HP15_p187g173 and HP15_p187g174 are separated by 15 nucleotides HP15_p187g174 and HP15_p187g175 are separated by 195 nucleotides
HP15_p187g172: HP15_p187g172 - single-stranded-DNA-specific exonuclease RecJ-like protein, at 177,303 to 179,270
_p187g172
HP15_p187g173: HP15_p187g173 - protein containing diguanylate cyclase, predicted domains, at 179,267 to 181,339
_p187g173
HP15_p187g174: HP15_p187g174 - protein containing Type IV pilus assembly PilZ domain, at 181,355 to 181,906
_p187g174
HP15_p187g175: HP15_p187g175 - conserved hypothetical protein, at 182,102 to 182,698
_p187g175
Position (kb) 179
180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 178.291 kb on + strand, within HP15_p187g172 at 178.298 kb on - strand, within HP15_p187g172 at 178.318 kb on - strand, within HP15_p187g172 at 178.351 kb on - strand, within HP15_p187g172 at 178.351 kb on - strand, within HP15_p187g172 at 178.360 kb on + strand, within HP15_p187g172 at 178.360 kb on - strand, within HP15_p187g172 at 178.363 kb on - strand, within HP15_p187g172 at 178.406 kb on + strand, within HP15_p187g172 at 178.406 kb on + strand, within HP15_p187g172 at 178.414 kb on - strand, within HP15_p187g172 at 178.414 kb on - strand, within HP15_p187g172 at 178.414 kb on - strand, within HP15_p187g172 at 178.459 kb on - strand, within HP15_p187g172 at 178.488 kb on + strand, within HP15_p187g172 at 178.552 kb on + strand, within HP15_p187g172 at 178.552 kb on + strand, within HP15_p187g172 at 178.560 kb on - strand, within HP15_p187g172 at 178.625 kb on + strand, within HP15_p187g172 at 178.630 kb on + strand, within HP15_p187g172 at 178.638 kb on - strand, within HP15_p187g172 at 178.638 kb on - strand, within HP15_p187g172 at 178.638 kb on - strand, within HP15_p187g172 at 178.655 kb on - strand, within HP15_p187g172 at 178.678 kb on + strand, within HP15_p187g172 at 178.686 kb on - strand, within HP15_p187g172 at 178.861 kb on - strand, within HP15_p187g172 at 178.906 kb on + strand, within HP15_p187g172 at 178.914 kb on - strand, within HP15_p187g172 at 178.914 kb on - strand, within HP15_p187g172 at 178.939 kb on - strand, within HP15_p187g172 at 178.941 kb on - strand, within HP15_p187g172 at 178.941 kb on - strand, within HP15_p187g172 at 178.952 kb on + strand, within HP15_p187g172 at 178.960 kb on - strand, within HP15_p187g172 at 178.967 kb on + strand, within HP15_p187g172 at 178.977 kb on + strand, within HP15_p187g172 at 178.978 kb on - strand, within HP15_p187g172 at 178.985 kb on - strand, within HP15_p187g172 at 178.994 kb on - strand, within HP15_p187g172 at 179.124 kb on + strand at 179.124 kb on + strand at 179.124 kb on + strand at 179.124 kb on + strand at 179.124 kb on + strand at 179.132 kb on - strand at 179.132 kb on - strand at 179.212 kb on - strand at 179.255 kb on + strand at 179.258 kb on - strand at 179.258 kb on - strand at 179.297 kb on + strand at 179.407 kb on - strand at 179.415 kb on + strand at 179.415 kb on + strand at 179.423 kb on - strand at 179.423 kb on - strand at 179.423 kb on - strand at 179.423 kb on - strand at 179.425 kb on + strand at 179.446 kb on - strand at 179.466 kb on + strand at 179.474 kb on - strand at 179.474 kb on - strand at 179.507 kb on + strand, within HP15_p187g173 at 179.584 kb on - strand, within HP15_p187g173 at 179.676 kb on - strand, within HP15_p187g173 at 179.695 kb on - strand, within HP15_p187g173 at 179.776 kb on + strand, within HP15_p187g173 at 179.776 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.837 kb on + strand, within HP15_p187g173 at 179.847 kb on - strand, within HP15_p187g173 at 179.867 kb on + strand, within HP15_p187g173 at 179.867 kb on + strand, within HP15_p187g173 at 179.877 kb on + strand, within HP15_p187g173 at 179.910 kb on - strand, within HP15_p187g173 at 179.910 kb on - strand, within HP15_p187g173 at 179.928 kb on - strand, within HP15_p187g173 at 179.938 kb on - strand, within HP15_p187g173 at 179.938 kb on - strand, within HP15_p187g173 at 179.969 kb on - strand, within HP15_p187g173 at 180.009 kb on - strand, within HP15_p187g173 at 180.016 kb on + strand, within HP15_p187g173 at 180.129 kb on - strand, within HP15_p187g173 at 180.162 kb on + strand, within HP15_p187g173 at 180.206 kb on - strand, within HP15_p187g173 at 180.307 kb on - strand, within HP15_p187g173 at 180.352 kb on + strand, within HP15_p187g173 at 180.352 kb on + strand, within HP15_p187g173 at 180.359 kb on + strand, within HP15_p187g173 at 180.360 kb on - strand, within HP15_p187g173 at 180.368 kb on - strand, within HP15_p187g173 at 180.387 kb on + strand, within HP15_p187g173 at 180.397 kb on + strand, within HP15_p187g173 at 180.405 kb on - strand, within HP15_p187g173 at 180.405 kb on - strand, within HP15_p187g173 at 180.439 kb on - strand, within HP15_p187g173 at 180.448 kb on + strand, within HP15_p187g173 at 180.487 kb on + strand, within HP15_p187g173 at 180.487 kb on + strand, within HP15_p187g173 at 180.495 kb on - strand, within HP15_p187g173 at 180.495 kb on - strand, within HP15_p187g173 at 180.495 kb on - strand, within HP15_p187g173 at 180.497 kb on - strand, within HP15_p187g173 at 180.499 kb on + strand, within HP15_p187g173 at 180.537 kb on - strand, within HP15_p187g173 at 180.578 kb on - strand, within HP15_p187g173 at 180.632 kb on - strand, within HP15_p187g173 at 180.632 kb on - strand, within HP15_p187g173 at 180.637 kb on + strand, within HP15_p187g173 at 180.637 kb on + strand, within HP15_p187g173 at 180.647 kb on + strand, within HP15_p187g173 at 180.647 kb on + strand, within HP15_p187g173 at 180.654 kb on + strand, within HP15_p187g173 at 180.657 kb on - strand, within HP15_p187g173 at 180.662 kb on - strand, within HP15_p187g173 at 180.664 kb on + strand, within HP15_p187g173 at 180.664 kb on + strand, within HP15_p187g173 at 180.664 kb on + strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.677 kb on - strand, within HP15_p187g173 at 180.750 kb on - strand, within HP15_p187g173 at 180.763 kb on - strand, within HP15_p187g173 at 180.763 kb on - strand, within HP15_p187g173 at 180.805 kb on + strand, within HP15_p187g173 at 180.813 kb on - strand, within HP15_p187g173 at 180.825 kb on + strand, within HP15_p187g173 at 180.831 kb on - strand, within HP15_p187g173 at 180.946 kb on + strand, within HP15_p187g173 at 181.005 kb on + strand, within HP15_p187g173 at 181.048 kb on + strand, within HP15_p187g173 at 181.070 kb on + strand, within HP15_p187g173 at 181.094 kb on + strand, within HP15_p187g173 at 181.094 kb on + strand, within HP15_p187g173 at 181.145 kb on - strand at 181.215 kb on + strand at 181.259 kb on + strand at 181.283 kb on - strand at 181.285 kb on + strand at 181.285 kb on + strand at 181.285 kb on + strand at 181.293 kb on - strand at 181.293 kb on - strand at 181.343 kb on + strand at 181.428 kb on - strand, within HP15_p187g174 at 181.465 kb on - strand, within HP15_p187g174 at 181.471 kb on + strand, within HP15_p187g174 at 181.484 kb on + strand, within HP15_p187g174 at 181.501 kb on + strand, within HP15_p187g174 at 181.547 kb on + strand, within HP15_p187g174 at 181.547 kb on + strand, within HP15_p187g174 at 181.555 kb on - strand, within HP15_p187g174 at 181.555 kb on - strand, within HP15_p187g174 at 181.567 kb on + strand, within HP15_p187g174 at 181.570 kb on - strand, within HP15_p187g174 at 181.575 kb on + strand, within HP15_p187g174 at 181.667 kb on + strand, within HP15_p187g174 at 181.685 kb on - strand, within HP15_p187g174 at 181.699 kb on - strand, within HP15_p187g174 at 181.699 kb on - strand, within HP15_p187g174 at 181.717 kb on + strand, within HP15_p187g174 at 181.726 kb on - strand, within HP15_p187g174 at 181.906 kb on - strand at 181.999 kb on + strand at 182.007 kb on - strand at 182.059 kb on + strand at 182.069 kb on + strand at 182.069 kb on + strand at 182.077 kb on - strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.083 kb on + strand at 182.086 kb on - strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.091 kb on - strand at 182.091 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.098 kb on - strand at 182.100 kb on + strand at 182.136 kb on + strand at 182.210 kb on + strand, within HP15_p187g175 at 182.210 kb on + strand, within HP15_p187g175 at 182.251 kb on - strand, within HP15_p187g175
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 178,291 + HP15_p187g172 0.50 +0.6 178,298 - HP15_p187g172 0.51 +1.8 178,318 - HP15_p187g172 0.52 +0.0 178,351 - HP15_p187g172 0.53 -0.2 178,351 - HP15_p187g172 0.53 +1.1 178,360 + HP15_p187g172 0.54 +1.3 178,360 - HP15_p187g172 0.54 +1.8 178,363 - HP15_p187g172 0.54 +0.8 178,406 + HP15_p187g172 0.56 -0.3 178,406 + HP15_p187g172 0.56 +1.6 178,414 - HP15_p187g172 0.56 +0.0 178,414 - HP15_p187g172 0.56 -0.1 178,414 - HP15_p187g172 0.56 +0.6 178,459 - HP15_p187g172 0.59 +1.5 178,488 + HP15_p187g172 0.60 +1.4 178,552 + HP15_p187g172 0.63 -0.9 178,552 + HP15_p187g172 0.63 +1.2 178,560 - HP15_p187g172 0.64 +0.4 178,625 + HP15_p187g172 0.67 +0.8 178,630 + HP15_p187g172 0.67 -0.2 178,638 - HP15_p187g172 0.68 +0.9 178,638 - HP15_p187g172 0.68 +0.9 178,638 - HP15_p187g172 0.68 +0.5 178,655 - HP15_p187g172 0.69 +0.2 178,678 + HP15_p187g172 0.70 +0.0 178,686 - HP15_p187g172 0.70 -0.6 178,861 - HP15_p187g172 0.79 +1.5 178,906 + HP15_p187g172 0.81 -1.6 178,914 - HP15_p187g172 0.82 -0.7 178,914 - HP15_p187g172 0.82 +0.9 178,939 - HP15_p187g172 0.83 +0.4 178,941 - HP15_p187g172 0.83 +1.2 178,941 - HP15_p187g172 0.83 +0.9 178,952 + HP15_p187g172 0.84 +1.3 178,960 - HP15_p187g172 0.84 -0.1 178,967 + HP15_p187g172 0.85 +1.2 178,977 + HP15_p187g172 0.85 -0.3 178,978 - HP15_p187g172 0.85 +1.1 178,985 - HP15_p187g172 0.85 -0.5 178,994 - HP15_p187g172 0.86 +2.8 179,124 + -1.0 179,124 + -0.5 179,124 + +1.0 179,124 + +1.5 179,124 + +1.0 179,132 - -1.4 179,132 - +0.9 179,212 - -0.7 179,255 + +1.5 179,258 - -1.0 179,258 - +1.2 179,297 + -0.1 179,407 - +0.6 179,415 + +1.1 179,415 + -0.2 179,423 - +0.6 179,423 - -0.4 179,423 - +0.2 179,423 - +0.0 179,425 + -0.6 179,446 - -0.1 179,466 + +2.2 179,474 - -0.3 179,474 - -0.2 179,507 + HP15_p187g173 0.12 -0.2 179,584 - HP15_p187g173 0.15 -0.2 179,676 - HP15_p187g173 0.20 -1.1 179,695 - HP15_p187g173 0.21 +0.4 179,776 + HP15_p187g173 0.25 +2.8 179,776 + HP15_p187g173 0.25 -0.6 179,816 + HP15_p187g173 0.26 +0.0 179,816 + HP15_p187g173 0.26 +1.2 179,816 + HP15_p187g173 0.26 +1.5 179,816 + HP15_p187g173 0.26 +0.6 179,824 - HP15_p187g173 0.27 +2.2 179,824 - HP15_p187g173 0.27 +0.1 179,824 - HP15_p187g173 0.27 +0.2 179,824 - HP15_p187g173 0.27 +1.8 179,837 + HP15_p187g173 0.27 +0.9 179,847 - HP15_p187g173 0.28 +1.4 179,867 + HP15_p187g173 0.29 +0.8 179,867 + HP15_p187g173 0.29 +1.0 179,877 + HP15_p187g173 0.29 +0.3 179,910 - HP15_p187g173 0.31 -0.2 179,910 - HP15_p187g173 0.31 +0.6 179,928 - HP15_p187g173 0.32 -0.2 179,938 - HP15_p187g173 0.32 +1.1 179,938 - HP15_p187g173 0.32 +1.4 179,969 - HP15_p187g173 0.34 +1.0 180,009 - HP15_p187g173 0.36 +0.5 180,016 + HP15_p187g173 0.36 -2.3 180,129 - HP15_p187g173 0.42 -0.8 180,162 + HP15_p187g173 0.43 +1.2 180,206 - HP15_p187g173 0.45 +1.5 180,307 - HP15_p187g173 0.50 -0.2 180,352 + HP15_p187g173 0.52 +1.5 180,352 + HP15_p187g173 0.52 +0.3 180,359 + HP15_p187g173 0.53 -0.8 180,360 - HP15_p187g173 0.53 -0.6 180,368 - HP15_p187g173 0.53 +0.2 180,387 + HP15_p187g173 0.54 -0.3 180,397 + HP15_p187g173 0.55 +1.1 180,405 - HP15_p187g173 0.55 +1.3 180,405 - HP15_p187g173 0.55 +1.5 180,439 - HP15_p187g173 0.57 +1.1 180,448 + HP15_p187g173 0.57 -2.0 180,487 + HP15_p187g173 0.59 +0.1 180,487 + HP15_p187g173 0.59 -0.7 180,495 - HP15_p187g173 0.59 -0.3 180,495 - HP15_p187g173 0.59 +1.6 180,495 - HP15_p187g173 0.59 +1.0 180,497 - HP15_p187g173 0.59 +0.3 180,499 + HP15_p187g173 0.59 +0.4 180,537 - HP15_p187g173 0.61 +1.4 180,578 - HP15_p187g173 0.63 +0.1 180,632 - HP15_p187g173 0.66 +0.1 180,632 - HP15_p187g173 0.66 +1.1 180,637 + HP15_p187g173 0.66 -0.3 180,637 + HP15_p187g173 0.66 +0.2 180,647 + HP15_p187g173 0.67 -0.2 180,647 + HP15_p187g173 0.67 +0.9 180,654 + HP15_p187g173 0.67 +1.0 180,657 - HP15_p187g173 0.67 -0.5 180,662 - HP15_p187g173 0.67 +0.8 180,664 + HP15_p187g173 0.67 +1.2 180,664 + HP15_p187g173 0.67 -0.3 180,664 + HP15_p187g173 0.67 -0.1 180,672 - HP15_p187g173 0.68 +1.3 180,672 - HP15_p187g173 0.68 +0.0 180,672 - HP15_p187g173 0.68 -0.4 180,672 - HP15_p187g173 0.68 +1.2 180,672 - HP15_p187g173 0.68 -1.0 180,672 - HP15_p187g173 0.68 +0.5 180,672 - HP15_p187g173 0.68 +1.7 180,672 - HP15_p187g173 0.68 +0.4 180,677 - HP15_p187g173 0.68 -0.1 180,750 - HP15_p187g173 0.72 -0.1 180,763 - HP15_p187g173 0.72 +2.8 180,763 - HP15_p187g173 0.72 +1.7 180,805 + HP15_p187g173 0.74 +0.3 180,813 - HP15_p187g173 0.75 -0.1 180,825 + HP15_p187g173 0.75 +0.1 180,831 - HP15_p187g173 0.75 +0.6 180,946 + HP15_p187g173 0.81 +1.7 181,005 + HP15_p187g173 0.84 -0.1 181,048 + HP15_p187g173 0.86 +0.1 181,070 + HP15_p187g173 0.87 -1.1 181,094 + HP15_p187g173 0.88 +0.1 181,094 + HP15_p187g173 0.88 -0.4 181,145 - +0.4 181,215 + +1.3 181,259 + -0.8 181,283 - +0.9 181,285 + -1.1 181,285 + +0.2 181,285 + +0.2 181,293 - -0.5 181,293 - +0.8 181,343 + -0.3 181,428 - HP15_p187g174 0.13 +0.8 181,465 - HP15_p187g174 0.20 +0.0 181,471 + HP15_p187g174 0.21 +0.1 181,484 + HP15_p187g174 0.23 -2.0 181,501 + HP15_p187g174 0.26 -0.2 181,547 + HP15_p187g174 0.35 +1.0 181,547 + HP15_p187g174 0.35 +0.7 181,555 - HP15_p187g174 0.36 +0.2 181,555 - HP15_p187g174 0.36 +2.2 181,567 + HP15_p187g174 0.38 -0.7 181,570 - HP15_p187g174 0.39 +1.0 181,575 + HP15_p187g174 0.40 +1.5 181,667 + HP15_p187g174 0.57 +0.1 181,685 - HP15_p187g174 0.60 +1.0 181,699 - HP15_p187g174 0.62 -0.8 181,699 - HP15_p187g174 0.62 +0.1 181,717 + HP15_p187g174 0.66 +0.3 181,726 - HP15_p187g174 0.67 +0.1 181,906 - -0.5 181,999 + +2.0 182,007 - -0.4 182,059 + +3.1 182,069 + +1.5 182,069 + -0.9 182,077 - +1.5 182,078 + +1.5 182,078 + -0.3 182,083 + -0.8 182,086 - -0.3 182,088 + +1.2 182,088 + +1.5 182,088 + -0.8 182,091 - -0.1 182,091 - -0.3 182,096 - -1.1 182,096 - -0.6 182,096 - +1.2 182,098 - +0.7 182,100 + +0.5 182,136 + -0.6 182,210 + HP15_p187g175 0.18 -1.1 182,210 + HP15_p187g175 0.18 -0.9 182,251 - HP15_p187g175 0.25 +0.4
Or see this region's nucleotide sequence