Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3113 and HP15_3114 are separated by 261 nucleotides HP15_3114 and HP15_3115 are separated by 69 nucleotides HP15_3115 and HP15_3116 are separated by 213 nucleotides
HP15_3113: HP15_3113 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein, at 3,263,705 to 3,264,511
_3113
HP15_3114: HP15_3114 - exopolysaccharide synthesis, ExoD, at 3,264,773 to 3,265,369
_3114
HP15_3115: HP15_3115 - oxidoreductase, short-chain dehydrogenase/reductase family protein, at 3,265,439 to 3,266,095
_3115
HP15_3116: HP15_3116 - response regulator receiver modulated CheW protein, at 3,266,309 to 3,267,196
_3116
Position (kb)
3264
3265
3266 Strain fitness (log2 ratio)
-1
0
1
2 at 3263.797 kb on + strand, within HP15_3113 at 3263.804 kb on + strand, within HP15_3113 at 3263.904 kb on + strand, within HP15_3113 at 3264.089 kb on + strand, within HP15_3113 at 3264.099 kb on + strand, within HP15_3113 at 3264.171 kb on + strand, within HP15_3113 at 3264.171 kb on + strand, within HP15_3113 at 3264.171 kb on + strand, within HP15_3113 at 3264.179 kb on - strand, within HP15_3113 at 3264.202 kb on + strand, within HP15_3113 at 3264.219 kb on + strand, within HP15_3113 at 3264.222 kb on - strand, within HP15_3113 at 3264.229 kb on + strand, within HP15_3113 at 3264.237 kb on - strand, within HP15_3113 at 3264.327 kb on - strand, within HP15_3113 at 3264.331 kb on - strand, within HP15_3113 at 3264.366 kb on + strand, within HP15_3113 at 3264.413 kb on + strand, within HP15_3113 at 3264.413 kb on - strand, within HP15_3113 at 3264.462 kb on - strand at 3264.470 kb on + strand at 3264.484 kb on - strand at 3264.519 kb on + strand at 3264.519 kb on + strand at 3264.527 kb on - strand at 3264.529 kb on + strand at 3264.537 kb on - strand at 3264.581 kb on + strand at 3264.581 kb on + strand at 3264.586 kb on + strand at 3264.680 kb on + strand at 3264.680 kb on + strand at 3264.688 kb on - strand at 3264.702 kb on - strand at 3264.735 kb on + strand at 3264.778 kb on - strand at 3264.832 kb on + strand at 3264.853 kb on - strand, within HP15_3114 at 3264.853 kb on - strand, within HP15_3114 at 3264.975 kb on + strand, within HP15_3114 at 3264.975 kb on + strand, within HP15_3114 at 3264.975 kb on + strand, within HP15_3114 at 3264.975 kb on + strand, within HP15_3114 at 3264.975 kb on + strand, within HP15_3114 at 3264.983 kb on - strand, within HP15_3114 at 3265.082 kb on + strand, within HP15_3114 at 3265.158 kb on + strand, within HP15_3114 at 3265.166 kb on - strand, within HP15_3114 at 3265.216 kb on + strand, within HP15_3114 at 3265.226 kb on + strand, within HP15_3114 at 3265.405 kb on - strand at 3265.429 kb on - strand at 3265.622 kb on + strand, within HP15_3115 at 3265.630 kb on - strand, within HP15_3115 at 3265.630 kb on - strand, within HP15_3115 at 3265.666 kb on + strand, within HP15_3115 at 3265.816 kb on + strand, within HP15_3115 at 3265.877 kb on + strand, within HP15_3115 at 3265.919 kb on - strand, within HP15_3115 at 3265.921 kb on + strand, within HP15_3115 at 3265.921 kb on + strand, within HP15_3115 at 3265.921 kb on + strand, within HP15_3115 at 3265.974 kb on - strand, within HP15_3115 at 3266.066 kb on - strand at 3266.066 kb on - strand at 3266.066 kb on - strand at 3266.186 kb on - strand at 3266.205 kb on + strand at 3266.213 kb on - strand at 3266.217 kb on + strand at 3266.220 kb on - strand at 3266.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 3,263,797 + HP15_3113 0.11 +0.3 3,263,804 + HP15_3113 0.12 -0.1 3,263,904 + HP15_3113 0.25 -0.3 3,264,089 + HP15_3113 0.48 +0.9 3,264,099 + HP15_3113 0.49 -0.2 3,264,171 + HP15_3113 0.58 -0.8 3,264,171 + HP15_3113 0.58 -0.6 3,264,171 + HP15_3113 0.58 +2.0 3,264,179 - HP15_3113 0.59 +0.7 3,264,202 + HP15_3113 0.62 -0.5 3,264,219 + HP15_3113 0.64 -0.7 3,264,222 - HP15_3113 0.64 +1.3 3,264,229 + HP15_3113 0.65 -1.6 3,264,237 - HP15_3113 0.66 +0.1 3,264,327 - HP15_3113 0.77 +0.3 3,264,331 - HP15_3113 0.78 -1.7 3,264,366 + HP15_3113 0.82 -0.6 3,264,413 + HP15_3113 0.88 -0.2 3,264,413 - HP15_3113 0.88 +1.1 3,264,462 - +1.1 3,264,470 + -0.3 3,264,484 - +1.5 3,264,519 + -0.6 3,264,519 + +1.1 3,264,527 - -0.7 3,264,529 + +0.6 3,264,537 - +0.3 3,264,581 + -0.3 3,264,581 + -0.1 3,264,586 + +1.4 3,264,680 + +0.8 3,264,680 + -0.1 3,264,688 - +1.8 3,264,702 - +1.1 3,264,735 + +0.8 3,264,778 - +1.0 3,264,832 + -0.6 3,264,853 - HP15_3114 0.13 +1.4 3,264,853 - HP15_3114 0.13 +0.2 3,264,975 + HP15_3114 0.34 +0.1 3,264,975 + HP15_3114 0.34 +2.2 3,264,975 + HP15_3114 0.34 -0.7 3,264,975 + HP15_3114 0.34 +0.2 3,264,975 + HP15_3114 0.34 +0.3 3,264,983 - HP15_3114 0.35 +0.8 3,265,082 + HP15_3114 0.52 +0.6 3,265,158 + HP15_3114 0.64 +1.0 3,265,166 - HP15_3114 0.66 +0.1 3,265,216 + HP15_3114 0.74 +1.1 3,265,226 + HP15_3114 0.76 +0.4 3,265,405 - +1.1 3,265,429 - +0.7 3,265,622 + HP15_3115 0.28 +1.7 3,265,630 - HP15_3115 0.29 +1.3 3,265,630 - HP15_3115 0.29 +1.8 3,265,666 + HP15_3115 0.35 -0.5 3,265,816 + HP15_3115 0.57 -0.8 3,265,877 + HP15_3115 0.67 +2.6 3,265,919 - HP15_3115 0.73 -1.0 3,265,921 + HP15_3115 0.73 -0.3 3,265,921 + HP15_3115 0.73 +0.4 3,265,921 + HP15_3115 0.73 -0.7 3,265,974 - HP15_3115 0.81 +0.5 3,266,066 - +0.6 3,266,066 - -0.8 3,266,066 - +1.1 3,266,186 - +1.5 3,266,205 + +1.0 3,266,213 - +0.6 3,266,217 + +0.5 3,266,220 - +1.2 3,266,253 - -0.0
Or see this region's nucleotide sequence