Strain Fitness in Marinobacter adhaerens HP15 around HP15_2756

Experiment: DinoMM minimal media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2754 and HP15_2755 overlap by 4 nucleotidesHP15_2755 and HP15_2756 are separated by 10 nucleotidesHP15_2756 and HP15_2757 are separated by 74 nucleotidesHP15_2757 and HP15_2758 are separated by 133 nucleotides HP15_2754: HP15_2754 - conserved hypothetical protein, at 2,909,132 to 2,909,371 _2754 HP15_2755: HP15_2755 - homocysteine S-methyltransferase family protein, at 2,909,368 to 2,910,273 _2755 HP15_2756: HP15_2756 - metallo-beta-lactamase superfamily protein, at 2,910,284 to 2,912,314 _2756 HP15_2757: HP15_2757 - conserved hypothetical protein, at 2,912,389 to 2,912,712 _2757 HP15_2758: HP15_2758 - conserved hypothetical protein, membrane, at 2,912,846 to 2,913,310 _2758 Position (kb) 2910 2911 2912 2913Strain fitness (log2 ratio) -2 -1 0 1 2at 2909.338 kb on + strand, within HP15_2754at 2909.622 kb on + strand, within HP15_2755at 2909.622 kb on + strand, within HP15_2755at 2909.623 kb on - strand, within HP15_2755at 2909.734 kb on + strand, within HP15_2755at 2909.747 kb on - strand, within HP15_2755at 2909.791 kb on - strand, within HP15_2755at 2909.796 kb on - strand, within HP15_2755at 2909.796 kb on - strand, within HP15_2755at 2909.883 kb on - strand, within HP15_2755at 2909.937 kb on + strand, within HP15_2755at 2909.948 kb on + strand, within HP15_2755at 2910.021 kb on + strand, within HP15_2755at 2910.021 kb on - strand, within HP15_2755at 2910.114 kb on + strand, within HP15_2755at 2910.122 kb on - strand, within HP15_2755at 2910.122 kb on - strand, within HP15_2755at 2910.277 kb on + strandat 2910.282 kb on + strandat 2910.282 kb on + strandat 2910.285 kb on - strandat 2910.303 kb on + strandat 2910.315 kb on + strandat 2910.316 kb on - strandat 2910.473 kb on - strandat 2910.481 kb on + strandat 2910.488 kb on + strand, within HP15_2756at 2910.496 kb on - strand, within HP15_2756at 2910.563 kb on + strand, within HP15_2756at 2910.585 kb on + strand, within HP15_2756at 2910.627 kb on - strand, within HP15_2756at 2910.640 kb on - strand, within HP15_2756at 2910.651 kb on - strand, within HP15_2756at 2910.726 kb on - strand, within HP15_2756at 2910.743 kb on - strand, within HP15_2756at 2910.752 kb on + strand, within HP15_2756at 2910.757 kb on + strand, within HP15_2756at 2910.765 kb on - strand, within HP15_2756at 2910.791 kb on + strand, within HP15_2756at 2910.940 kb on + strand, within HP15_2756at 2910.955 kb on - strand, within HP15_2756at 2910.980 kb on - strand, within HP15_2756at 2910.997 kb on + strand, within HP15_2756at 2911.001 kb on + strand, within HP15_2756at 2911.015 kb on - strand, within HP15_2756at 2911.098 kb on + strand, within HP15_2756at 2911.134 kb on - strand, within HP15_2756at 2911.184 kb on + strand, within HP15_2756at 2911.184 kb on + strand, within HP15_2756at 2911.230 kb on + strand, within HP15_2756at 2911.314 kb on + strand, within HP15_2756at 2911.338 kb on + strand, within HP15_2756at 2911.338 kb on + strand, within HP15_2756at 2911.346 kb on - strand, within HP15_2756at 2911.402 kb on + strand, within HP15_2756at 2911.426 kb on + strand, within HP15_2756at 2911.470 kb on + strand, within HP15_2756at 2911.513 kb on + strand, within HP15_2756at 2911.527 kb on - strand, within HP15_2756at 2911.555 kb on - strand, within HP15_2756at 2911.565 kb on - strand, within HP15_2756at 2911.583 kb on + strand, within HP15_2756at 2911.601 kb on + strand, within HP15_2756at 2911.638 kb on - strand, within HP15_2756at 2911.663 kb on + strand, within HP15_2756at 2911.670 kb on + strand, within HP15_2756at 2911.671 kb on - strand, within HP15_2756at 2911.671 kb on - strand, within HP15_2756at 2911.671 kb on - strand, within HP15_2756at 2911.723 kb on + strand, within HP15_2756at 2911.730 kb on + strand, within HP15_2756at 2911.921 kb on - strand, within HP15_2756at 2911.949 kb on - strand, within HP15_2756at 2911.987 kb on + strand, within HP15_2756at 2911.987 kb on + strand, within HP15_2756at 2912.059 kb on - strand, within HP15_2756at 2912.097 kb on - strand, within HP15_2756at 2912.097 kb on - strand, within HP15_2756at 2912.104 kb on - strand, within HP15_2756at 2912.159 kb on + strandat 2912.172 kb on - strandat 2912.194 kb on - strandat 2912.195 kb on - strandat 2912.217 kb on - strandat 2912.247 kb on - strandat 2912.256 kb on + strandat 2912.361 kb on + strandat 2912.372 kb on + strandat 2912.372 kb on + strandat 2912.380 kb on - strandat 2912.380 kb on - strandat 2912.380 kb on - strandat 2912.380 kb on - strandat 2912.380 kb on - strandat 2912.429 kb on - strand, within HP15_2757at 2912.454 kb on + strand, within HP15_2757at 2912.497 kb on + strand, within HP15_2757at 2912.505 kb on - strand, within HP15_2757at 2912.505 kb on - strand, within HP15_2757at 2912.535 kb on + strand, within HP15_2757at 2912.741 kb on + strandat 2912.842 kb on - strandat 2912.844 kb on - strandat 2912.937 kb on + strand, within HP15_2758at 2912.998 kb on + strand, within HP15_2758at 2913.060 kb on + strand, within HP15_2758at 2913.235 kb on + strand, within HP15_2758at 2913.293 kb on + strandat 2913.312 kb on - strandat 2913.312 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
remove
2,909,338 + HP15_2754 0.86 -1.7
2,909,622 + HP15_2755 0.28 -0.4
2,909,622 + HP15_2755 0.28 +0.1
2,909,623 - HP15_2755 0.28 -0.0
2,909,734 + HP15_2755 0.40 -0.7
2,909,747 - HP15_2755 0.42 -1.5
2,909,791 - HP15_2755 0.47 -0.8
2,909,796 - HP15_2755 0.47 -1.2
2,909,796 - HP15_2755 0.47 +1.3
2,909,883 - HP15_2755 0.57 -1.4
2,909,937 + HP15_2755 0.63 -0.1
2,909,948 + HP15_2755 0.64 -1.2
2,910,021 + HP15_2755 0.72 +1.4
2,910,021 - HP15_2755 0.72 -1.6
2,910,114 + HP15_2755 0.82 -1.0
2,910,122 - HP15_2755 0.83 -2.0
2,910,122 - HP15_2755 0.83 -0.4
2,910,277 + +0.5
2,910,282 + +1.0
2,910,282 + -0.2
2,910,285 - +1.2
2,910,303 + -0.2
2,910,315 + -0.6
2,910,316 - +1.0
2,910,473 - +1.0
2,910,481 + -0.3
2,910,488 + HP15_2756 0.10 -0.8
2,910,496 - HP15_2756 0.10 +1.3
2,910,563 + HP15_2756 0.14 +0.8
2,910,585 + HP15_2756 0.15 -1.1
2,910,627 - HP15_2756 0.17 -0.3
2,910,640 - HP15_2756 0.18 +0.1
2,910,651 - HP15_2756 0.18 -0.4
2,910,726 - HP15_2756 0.22 -0.9
2,910,743 - HP15_2756 0.23 -1.2
2,910,752 + HP15_2756 0.23 +1.8
2,910,757 + HP15_2756 0.23 -1.5
2,910,765 - HP15_2756 0.24 -0.0
2,910,791 + HP15_2756 0.25 -0.7
2,910,940 + HP15_2756 0.32 +0.2
2,910,955 - HP15_2756 0.33 +1.2
2,910,980 - HP15_2756 0.34 +1.2
2,910,997 + HP15_2756 0.35 +0.2
2,911,001 + HP15_2756 0.35 -1.5
2,911,015 - HP15_2756 0.36 +0.3
2,911,098 + HP15_2756 0.40 -1.1
2,911,134 - HP15_2756 0.42 -0.1
2,911,184 + HP15_2756 0.44 +0.8
2,911,184 + HP15_2756 0.44 +0.9
2,911,230 + HP15_2756 0.47 -0.2
2,911,314 + HP15_2756 0.51 -0.2
2,911,338 + HP15_2756 0.52 -2.3
2,911,338 + HP15_2756 0.52 -0.3
2,911,346 - HP15_2756 0.52 -0.0
2,911,402 + HP15_2756 0.55 -0.3
2,911,426 + HP15_2756 0.56 -0.6
2,911,470 + HP15_2756 0.58 +0.4
2,911,513 + HP15_2756 0.61 +0.2
2,911,527 - HP15_2756 0.61 -0.3
2,911,555 - HP15_2756 0.63 +0.2
2,911,565 - HP15_2756 0.63 -0.6
2,911,583 + HP15_2756 0.64 -0.0
2,911,601 + HP15_2756 0.65 -0.8
2,911,638 - HP15_2756 0.67 -1.2
2,911,663 + HP15_2756 0.68 +0.3
2,911,670 + HP15_2756 0.68 +0.5
2,911,671 - HP15_2756 0.68 +2.0
2,911,671 - HP15_2756 0.68 -1.2
2,911,671 - HP15_2756 0.68 +0.1
2,911,723 + HP15_2756 0.71 +1.3
2,911,730 + HP15_2756 0.71 -0.4
2,911,921 - HP15_2756 0.81 +0.3
2,911,949 - HP15_2756 0.82 +1.1
2,911,987 + HP15_2756 0.84 -0.2
2,911,987 + HP15_2756 0.84 +0.6
2,912,059 - HP15_2756 0.87 -0.6
2,912,097 - HP15_2756 0.89 -0.2
2,912,097 - HP15_2756 0.89 -0.2
2,912,104 - HP15_2756 0.90 -0.1
2,912,159 + -0.5
2,912,172 - -1.3
2,912,194 - +1.1
2,912,195 - -1.7
2,912,217 - +1.1
2,912,247 - +0.4
2,912,256 + -0.0
2,912,361 + +0.4
2,912,372 + +0.2
2,912,372 + +1.0
2,912,380 - +0.2
2,912,380 - -0.5
2,912,380 - -0.4
2,912,380 - -0.3
2,912,380 - +0.6
2,912,429 - HP15_2757 0.12 +0.8
2,912,454 + HP15_2757 0.20 -0.2
2,912,497 + HP15_2757 0.33 +1.1
2,912,505 - HP15_2757 0.36 -1.0
2,912,505 - HP15_2757 0.36 -1.2
2,912,535 + HP15_2757 0.45 +1.7
2,912,741 + -1.2
2,912,842 - +0.4
2,912,844 - -0.4
2,912,937 + HP15_2758 0.20 -1.4
2,912,998 + HP15_2758 0.33 -1.7
2,913,060 + HP15_2758 0.46 -0.3
2,913,235 + HP15_2758 0.84 +0.4
2,913,293 + +0.0
2,913,312 - +1.7
2,913,312 - -1.5

Or see this region's nucleotide sequence