Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2754 and HP15_2755 overlap by 4 nucleotides HP15_2755 and HP15_2756 are separated by 10 nucleotides HP15_2756 and HP15_2757 are separated by 74 nucleotides HP15_2757 and HP15_2758 are separated by 133 nucleotides
HP15_2754: HP15_2754 - conserved hypothetical protein, at 2,909,132 to 2,909,371
_2754
HP15_2755: HP15_2755 - homocysteine S-methyltransferase family protein, at 2,909,368 to 2,910,273
_2755
HP15_2756: HP15_2756 - metallo-beta-lactamase superfamily protein, at 2,910,284 to 2,912,314
_2756
HP15_2757: HP15_2757 - conserved hypothetical protein, at 2,912,389 to 2,912,712
_2757
HP15_2758: HP15_2758 - conserved hypothetical protein, membrane, at 2,912,846 to 2,913,310
_2758
Position (kb)
2910
2911
2912
2913 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2909.338 kb on + strand, within HP15_2754 at 2909.622 kb on + strand, within HP15_2755 at 2909.622 kb on + strand, within HP15_2755 at 2909.623 kb on - strand, within HP15_2755 at 2909.734 kb on + strand, within HP15_2755 at 2909.747 kb on - strand, within HP15_2755 at 2909.791 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.883 kb on - strand, within HP15_2755 at 2909.937 kb on + strand, within HP15_2755 at 2909.948 kb on + strand, within HP15_2755 at 2910.021 kb on + strand, within HP15_2755 at 2910.021 kb on - strand, within HP15_2755 at 2910.114 kb on + strand, within HP15_2755 at 2910.122 kb on - strand, within HP15_2755 at 2910.122 kb on - strand, within HP15_2755 at 2910.277 kb on + strand at 2910.282 kb on + strand at 2910.282 kb on + strand at 2910.285 kb on - strand at 2910.303 kb on + strand at 2910.315 kb on + strand at 2910.316 kb on - strand at 2910.473 kb on - strand at 2910.481 kb on + strand at 2910.488 kb on + strand, within HP15_2756 at 2910.496 kb on - strand, within HP15_2756 at 2910.563 kb on + strand, within HP15_2756 at 2910.585 kb on + strand, within HP15_2756 at 2910.627 kb on - strand, within HP15_2756 at 2910.640 kb on - strand, within HP15_2756 at 2910.651 kb on - strand, within HP15_2756 at 2910.726 kb on - strand, within HP15_2756 at 2910.743 kb on - strand, within HP15_2756 at 2910.752 kb on + strand, within HP15_2756 at 2910.757 kb on + strand, within HP15_2756 at 2910.765 kb on - strand, within HP15_2756 at 2910.791 kb on + strand, within HP15_2756 at 2910.940 kb on + strand, within HP15_2756 at 2910.955 kb on - strand, within HP15_2756 at 2910.980 kb on - strand, within HP15_2756 at 2910.997 kb on + strand, within HP15_2756 at 2911.001 kb on + strand, within HP15_2756 at 2911.015 kb on - strand, within HP15_2756 at 2911.098 kb on + strand, within HP15_2756 at 2911.134 kb on - strand, within HP15_2756 at 2911.184 kb on + strand, within HP15_2756 at 2911.184 kb on + strand, within HP15_2756 at 2911.230 kb on + strand, within HP15_2756 at 2911.314 kb on + strand, within HP15_2756 at 2911.338 kb on + strand, within HP15_2756 at 2911.338 kb on + strand, within HP15_2756 at 2911.346 kb on - strand, within HP15_2756 at 2911.402 kb on + strand, within HP15_2756 at 2911.426 kb on + strand, within HP15_2756 at 2911.470 kb on + strand, within HP15_2756 at 2911.513 kb on + strand, within HP15_2756 at 2911.527 kb on - strand, within HP15_2756 at 2911.555 kb on - strand, within HP15_2756 at 2911.565 kb on - strand, within HP15_2756 at 2911.583 kb on + strand, within HP15_2756 at 2911.601 kb on + strand, within HP15_2756 at 2911.638 kb on - strand, within HP15_2756 at 2911.663 kb on + strand, within HP15_2756 at 2911.670 kb on + strand, within HP15_2756 at 2911.671 kb on - strand, within HP15_2756 at 2911.671 kb on - strand, within HP15_2756 at 2911.671 kb on - strand, within HP15_2756 at 2911.723 kb on + strand, within HP15_2756 at 2911.730 kb on + strand, within HP15_2756 at 2911.921 kb on - strand, within HP15_2756 at 2911.949 kb on - strand, within HP15_2756 at 2911.987 kb on + strand, within HP15_2756 at 2911.987 kb on + strand, within HP15_2756 at 2912.059 kb on - strand, within HP15_2756 at 2912.097 kb on - strand, within HP15_2756 at 2912.097 kb on - strand, within HP15_2756 at 2912.104 kb on - strand, within HP15_2756 at 2912.159 kb on + strand at 2912.172 kb on - strand at 2912.194 kb on - strand at 2912.195 kb on - strand at 2912.217 kb on - strand at 2912.247 kb on - strand at 2912.256 kb on + strand at 2912.361 kb on + strand at 2912.372 kb on + strand at 2912.372 kb on + strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.429 kb on - strand, within HP15_2757 at 2912.454 kb on + strand, within HP15_2757 at 2912.497 kb on + strand, within HP15_2757 at 2912.505 kb on - strand, within HP15_2757 at 2912.505 kb on - strand, within HP15_2757 at 2912.535 kb on + strand, within HP15_2757 at 2912.741 kb on + strand at 2912.842 kb on - strand at 2912.844 kb on - strand at 2912.937 kb on + strand, within HP15_2758 at 2912.998 kb on + strand, within HP15_2758 at 2913.060 kb on + strand, within HP15_2758 at 2913.235 kb on + strand, within HP15_2758 at 2913.293 kb on + strand at 2913.312 kb on - strand at 2913.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,909,338 + HP15_2754 0.86 -1.7 2,909,622 + HP15_2755 0.28 -0.4 2,909,622 + HP15_2755 0.28 +0.1 2,909,623 - HP15_2755 0.28 -0.0 2,909,734 + HP15_2755 0.40 -0.7 2,909,747 - HP15_2755 0.42 -1.5 2,909,791 - HP15_2755 0.47 -0.8 2,909,796 - HP15_2755 0.47 -1.2 2,909,796 - HP15_2755 0.47 +1.3 2,909,883 - HP15_2755 0.57 -1.4 2,909,937 + HP15_2755 0.63 -0.1 2,909,948 + HP15_2755 0.64 -1.2 2,910,021 + HP15_2755 0.72 +1.4 2,910,021 - HP15_2755 0.72 -1.6 2,910,114 + HP15_2755 0.82 -1.0 2,910,122 - HP15_2755 0.83 -2.0 2,910,122 - HP15_2755 0.83 -0.4 2,910,277 + +0.5 2,910,282 + +1.0 2,910,282 + -0.2 2,910,285 - +1.2 2,910,303 + -0.2 2,910,315 + -0.6 2,910,316 - +1.0 2,910,473 - +1.0 2,910,481 + -0.3 2,910,488 + HP15_2756 0.10 -0.8 2,910,496 - HP15_2756 0.10 +1.3 2,910,563 + HP15_2756 0.14 +0.8 2,910,585 + HP15_2756 0.15 -1.1 2,910,627 - HP15_2756 0.17 -0.3 2,910,640 - HP15_2756 0.18 +0.1 2,910,651 - HP15_2756 0.18 -0.4 2,910,726 - HP15_2756 0.22 -0.9 2,910,743 - HP15_2756 0.23 -1.2 2,910,752 + HP15_2756 0.23 +1.8 2,910,757 + HP15_2756 0.23 -1.5 2,910,765 - HP15_2756 0.24 -0.0 2,910,791 + HP15_2756 0.25 -0.7 2,910,940 + HP15_2756 0.32 +0.2 2,910,955 - HP15_2756 0.33 +1.2 2,910,980 - HP15_2756 0.34 +1.2 2,910,997 + HP15_2756 0.35 +0.2 2,911,001 + HP15_2756 0.35 -1.5 2,911,015 - HP15_2756 0.36 +0.3 2,911,098 + HP15_2756 0.40 -1.1 2,911,134 - HP15_2756 0.42 -0.1 2,911,184 + HP15_2756 0.44 +0.8 2,911,184 + HP15_2756 0.44 +0.9 2,911,230 + HP15_2756 0.47 -0.2 2,911,314 + HP15_2756 0.51 -0.2 2,911,338 + HP15_2756 0.52 -2.3 2,911,338 + HP15_2756 0.52 -0.3 2,911,346 - HP15_2756 0.52 -0.0 2,911,402 + HP15_2756 0.55 -0.3 2,911,426 + HP15_2756 0.56 -0.6 2,911,470 + HP15_2756 0.58 +0.4 2,911,513 + HP15_2756 0.61 +0.2 2,911,527 - HP15_2756 0.61 -0.3 2,911,555 - HP15_2756 0.63 +0.2 2,911,565 - HP15_2756 0.63 -0.6 2,911,583 + HP15_2756 0.64 -0.0 2,911,601 + HP15_2756 0.65 -0.8 2,911,638 - HP15_2756 0.67 -1.2 2,911,663 + HP15_2756 0.68 +0.3 2,911,670 + HP15_2756 0.68 +0.5 2,911,671 - HP15_2756 0.68 +2.0 2,911,671 - HP15_2756 0.68 -1.2 2,911,671 - HP15_2756 0.68 +0.1 2,911,723 + HP15_2756 0.71 +1.3 2,911,730 + HP15_2756 0.71 -0.4 2,911,921 - HP15_2756 0.81 +0.3 2,911,949 - HP15_2756 0.82 +1.1 2,911,987 + HP15_2756 0.84 -0.2 2,911,987 + HP15_2756 0.84 +0.6 2,912,059 - HP15_2756 0.87 -0.6 2,912,097 - HP15_2756 0.89 -0.2 2,912,097 - HP15_2756 0.89 -0.2 2,912,104 - HP15_2756 0.90 -0.1 2,912,159 + -0.5 2,912,172 - -1.3 2,912,194 - +1.1 2,912,195 - -1.7 2,912,217 - +1.1 2,912,247 - +0.4 2,912,256 + -0.0 2,912,361 + +0.4 2,912,372 + +0.2 2,912,372 + +1.0 2,912,380 - +0.2 2,912,380 - -0.5 2,912,380 - -0.4 2,912,380 - -0.3 2,912,380 - +0.6 2,912,429 - HP15_2757 0.12 +0.8 2,912,454 + HP15_2757 0.20 -0.2 2,912,497 + HP15_2757 0.33 +1.1 2,912,505 - HP15_2757 0.36 -1.0 2,912,505 - HP15_2757 0.36 -1.2 2,912,535 + HP15_2757 0.45 +1.7 2,912,741 + -1.2 2,912,842 - +0.4 2,912,844 - -0.4 2,912,937 + HP15_2758 0.20 -1.4 2,912,998 + HP15_2758 0.33 -1.7 2,913,060 + HP15_2758 0.46 -0.3 2,913,235 + HP15_2758 0.84 +0.4 2,913,293 + +0.0 2,913,312 - +1.7 2,913,312 - -1.5
Or see this region's nucleotide sequence