Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2448 and HP15_2449 are separated by 9 nucleotides HP15_2449 and HP15_2450 are separated by 30 nucleotides HP15_2450 and HP15_2451 are separated by 40 nucleotides
HP15_2448: HP15_2448 - protein belonging to uncharacterized protein family UPF0307, at 2,585,059 to 2,585,586
_2448
HP15_2449: HP15_2449 - nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 2,585,596 to 2,586,441
_2449
HP15_2450: HP15_2450 - conserved hypothetical protein, at 2,586,472 to 2,590,227
_2450
HP15_2451: HP15_2451 - ribonuclease, Rne/Rng family, at 2,590,268 to 2,591,749
_2451
Position (kb)
2586
2587
2588
2589
2590
2591 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2585.549 kb on + strand at 2585.579 kb on - strand at 2585.685 kb on - strand, within HP15_2449 at 2585.690 kb on - strand, within HP15_2449 at 2585.723 kb on - strand, within HP15_2449 at 2585.790 kb on + strand, within HP15_2449 at 2585.880 kb on + strand, within HP15_2449 at 2585.930 kb on - strand, within HP15_2449 at 2586.130 kb on - strand, within HP15_2449 at 2586.141 kb on + strand, within HP15_2449 at 2586.149 kb on - strand, within HP15_2449 at 2586.240 kb on + strand, within HP15_2449 at 2586.631 kb on - strand at 2586.764 kb on - strand at 2586.835 kb on - strand at 2586.872 kb on + strand, within HP15_2450 at 2586.938 kb on + strand, within HP15_2450 at 2586.938 kb on + strand, within HP15_2450 at 2587.035 kb on + strand, within HP15_2450 at 2587.222 kb on - strand, within HP15_2450 at 2587.363 kb on + strand, within HP15_2450 at 2587.663 kb on + strand, within HP15_2450 at 2587.688 kb on + strand, within HP15_2450 at 2587.731 kb on - strand, within HP15_2450 at 2587.733 kb on - strand, within HP15_2450 at 2587.733 kb on - strand, within HP15_2450 at 2587.774 kb on + strand, within HP15_2450 at 2587.939 kb on + strand, within HP15_2450 at 2588.053 kb on - strand, within HP15_2450 at 2588.157 kb on - strand, within HP15_2450 at 2588.249 kb on - strand, within HP15_2450 at 2588.254 kb on + strand, within HP15_2450 at 2588.316 kb on - strand, within HP15_2450 at 2588.352 kb on + strand, within HP15_2450 at 2588.372 kb on + strand, within HP15_2450 at 2588.372 kb on + strand, within HP15_2450 at 2588.372 kb on + strand, within HP15_2450 at 2588.380 kb on - strand, within HP15_2450 at 2588.380 kb on - strand, within HP15_2450 at 2588.460 kb on + strand, within HP15_2450 at 2588.463 kb on - strand, within HP15_2450 at 2588.471 kb on + strand, within HP15_2450 at 2588.566 kb on - strand, within HP15_2450 at 2588.637 kb on - strand, within HP15_2450 at 2589.334 kb on + strand, within HP15_2450 at 2589.342 kb on - strand, within HP15_2450 at 2589.482 kb on + strand, within HP15_2450 at 2589.484 kb on + strand, within HP15_2450 at 2589.557 kb on + strand, within HP15_2450 at 2589.557 kb on + strand, within HP15_2450 at 2589.668 kb on + strand, within HP15_2450 at 2589.813 kb on + strand, within HP15_2450 at 2589.813 kb on + strand, within HP15_2450 at 2589.866 kb on - strand at 2589.876 kb on - strand at 2590.243 kb on - strand at 2590.279 kb on - strand at 2590.284 kb on - strand at 2590.421 kb on + strand, within HP15_2451 at 2590.537 kb on + strand, within HP15_2451 at 2590.850 kb on - strand, within HP15_2451 at 2590.903 kb on - strand, within HP15_2451 at 2591.166 kb on - strand, within HP15_2451
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,585,549 + -0.9 2,585,579 - -1.1 2,585,685 - HP15_2449 0.11 -1.2 2,585,690 - HP15_2449 0.11 -0.5 2,585,723 - HP15_2449 0.15 -0.4 2,585,790 + HP15_2449 0.23 +1.6 2,585,880 + HP15_2449 0.34 -0.6 2,585,930 - HP15_2449 0.39 +0.0 2,586,130 - HP15_2449 0.63 +0.0 2,586,141 + HP15_2449 0.64 -0.3 2,586,149 - HP15_2449 0.65 -0.5 2,586,240 + HP15_2449 0.76 -0.6 2,586,631 - -0.4 2,586,764 - +0.6 2,586,835 - -1.3 2,586,872 + HP15_2450 0.11 +1.0 2,586,938 + HP15_2450 0.12 +0.4 2,586,938 + HP15_2450 0.12 +0.3 2,587,035 + HP15_2450 0.15 +2.0 2,587,222 - HP15_2450 0.20 +0.5 2,587,363 + HP15_2450 0.24 +0.5 2,587,663 + HP15_2450 0.32 +0.9 2,587,688 + HP15_2450 0.32 +0.3 2,587,731 - HP15_2450 0.34 +1.5 2,587,733 - HP15_2450 0.34 -0.4 2,587,733 - HP15_2450 0.34 -0.4 2,587,774 + HP15_2450 0.35 +1.0 2,587,939 + HP15_2450 0.39 -1.7 2,588,053 - HP15_2450 0.42 -0.1 2,588,157 - HP15_2450 0.45 -0.5 2,588,249 - HP15_2450 0.47 +1.2 2,588,254 + HP15_2450 0.47 -0.1 2,588,316 - HP15_2450 0.49 -1.9 2,588,352 + HP15_2450 0.50 -1.6 2,588,372 + HP15_2450 0.51 +0.8 2,588,372 + HP15_2450 0.51 -0.9 2,588,372 + HP15_2450 0.51 +1.1 2,588,380 - HP15_2450 0.51 +0.5 2,588,380 - HP15_2450 0.51 -0.9 2,588,460 + HP15_2450 0.53 -0.4 2,588,463 - HP15_2450 0.53 -2.3 2,588,471 + HP15_2450 0.53 +3.0 2,588,566 - HP15_2450 0.56 +0.0 2,588,637 - HP15_2450 0.58 +1.6 2,589,334 + HP15_2450 0.76 +0.2 2,589,342 - HP15_2450 0.76 -0.2 2,589,482 + HP15_2450 0.80 +0.2 2,589,484 + HP15_2450 0.80 +0.2 2,589,557 + HP15_2450 0.82 +0.4 2,589,557 + HP15_2450 0.82 +0.7 2,589,668 + HP15_2450 0.85 -0.9 2,589,813 + HP15_2450 0.89 -0.4 2,589,813 + HP15_2450 0.89 +0.1 2,589,866 - -0.3 2,589,876 - +0.1 2,590,243 - +1.1 2,590,279 - +2.6 2,590,284 - +0.7 2,590,421 + HP15_2451 0.10 +0.9 2,590,537 + HP15_2451 0.18 +1.4 2,590,850 - HP15_2451 0.39 -0.1 2,590,903 - HP15_2451 0.43 -1.6 2,591,166 - HP15_2451 0.61 +0.9
Or see this region's nucleotide sequence