Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2233 and HP15_2234 are separated by 52 nucleotides HP15_2234 and HP15_2235 are separated by 737 nucleotides
HP15_2233: HP15_2233 - MORN repeat protein, at 2,352,504 to 2,353,817
_2233
HP15_2234: HP15_2234 - CheY-like receiver protein, at 2,353,870 to 2,354,964
_2234
HP15_2235: HP15_2235 - 6-pyruvoyl tetrahydropterin synthase-like protein, at 2,355,702 to 2,356,553
_2235
Position (kb)
2353
2354
2355 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2352.999 kb on - strand, within HP15_2233 at 2353.026 kb on + strand, within HP15_2233 at 2353.180 kb on + strand, within HP15_2233 at 2353.256 kb on + strand, within HP15_2233 at 2353.303 kb on - strand, within HP15_2233 at 2353.303 kb on - strand, within HP15_2233 at 2353.428 kb on + strand, within HP15_2233 at 2353.428 kb on + strand, within HP15_2233 at 2353.436 kb on - strand, within HP15_2233 at 2353.502 kb on + strand, within HP15_2233 at 2353.502 kb on + strand, within HP15_2233 at 2353.599 kb on + strand, within HP15_2233 at 2353.760 kb on + strand at 2353.901 kb on + strand at 2353.902 kb on + strand at 2353.909 kb on - strand at 2353.910 kb on - strand at 2354.010 kb on - strand, within HP15_2234 at 2354.057 kb on + strand, within HP15_2234 at 2354.065 kb on - strand, within HP15_2234 at 2354.380 kb on + strand, within HP15_2234 at 2354.398 kb on + strand, within HP15_2234 at 2354.475 kb on + strand, within HP15_2234 at 2354.563 kb on + strand, within HP15_2234 at 2354.631 kb on + strand, within HP15_2234 at 2354.636 kb on + strand, within HP15_2234 at 2354.692 kb on + strand, within HP15_2234 at 2354.738 kb on - strand, within HP15_2234 at 2354.738 kb on - strand, within HP15_2234 at 2354.828 kb on + strand, within HP15_2234 at 2354.828 kb on + strand, within HP15_2234 at 2354.876 kb on - strand at 2354.919 kb on - strand at 2354.920 kb on - strand at 2354.958 kb on + strand at 2354.970 kb on + strand at 2355.007 kb on - strand at 2355.099 kb on + strand at 2355.144 kb on + strand at 2355.164 kb on - strand at 2355.262 kb on - strand at 2355.265 kb on + strand at 2355.419 kb on + strand at 2355.637 kb on - strand at 2355.934 kb on - strand, within HP15_2235 at 2355.950 kb on + strand, within HP15_2235
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 2,352,999 - HP15_2233 0.38 +0.0 2,353,026 + HP15_2233 0.40 +1.9 2,353,180 + HP15_2233 0.51 -0.7 2,353,256 + HP15_2233 0.57 -0.3 2,353,303 - HP15_2233 0.61 +0.4 2,353,303 - HP15_2233 0.61 +0.3 2,353,428 + HP15_2233 0.70 -0.3 2,353,428 + HP15_2233 0.70 +2.0 2,353,436 - HP15_2233 0.71 -0.6 2,353,502 + HP15_2233 0.76 +0.1 2,353,502 + HP15_2233 0.76 +2.9 2,353,599 + HP15_2233 0.83 -0.4 2,353,760 + -1.6 2,353,901 + +0.1 2,353,902 + +0.3 2,353,909 - -0.5 2,353,910 - +0.7 2,354,010 - HP15_2234 0.13 -0.2 2,354,057 + HP15_2234 0.17 -0.9 2,354,065 - HP15_2234 0.18 +1.0 2,354,380 + HP15_2234 0.47 +0.6 2,354,398 + HP15_2234 0.48 -0.3 2,354,475 + HP15_2234 0.55 -1.2 2,354,563 + HP15_2234 0.63 -0.4 2,354,631 + HP15_2234 0.69 +1.3 2,354,636 + HP15_2234 0.70 -0.4 2,354,692 + HP15_2234 0.75 -0.4 2,354,738 - HP15_2234 0.79 +0.5 2,354,738 - HP15_2234 0.79 -0.3 2,354,828 + HP15_2234 0.87 +0.1 2,354,828 + HP15_2234 0.87 -0.4 2,354,876 - +0.5 2,354,919 - +1.1 2,354,920 - +0.4 2,354,958 + -0.0 2,354,970 + -1.2 2,355,007 - -0.8 2,355,099 + -0.5 2,355,144 + -0.5 2,355,164 - -0.3 2,355,262 - -0.2 2,355,265 + -0.4 2,355,419 + +1.1 2,355,637 - +1.3 2,355,934 - HP15_2235 0.27 +0.4 2,355,950 + HP15_2235 0.29 -0.3
Or see this region's nucleotide sequence