Strain Fitness in Marinobacter adhaerens HP15 around HP15_2234

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2233 and HP15_2234 are separated by 52 nucleotidesHP15_2234 and HP15_2235 are separated by 737 nucleotides HP15_2233: HP15_2233 - MORN repeat protein, at 2,352,504 to 2,353,817 _2233 HP15_2234: HP15_2234 - CheY-like receiver protein, at 2,353,870 to 2,354,964 _2234 HP15_2235: HP15_2235 - 6-pyruvoyl tetrahydropterin synthase-like protein, at 2,355,702 to 2,356,553 _2235 Position (kb) 2353 2354 2355Strain fitness (log2 ratio) -1 0 1 2 3at 2352.999 kb on - strand, within HP15_2233at 2353.026 kb on + strand, within HP15_2233at 2353.180 kb on + strand, within HP15_2233at 2353.256 kb on + strand, within HP15_2233at 2353.303 kb on - strand, within HP15_2233at 2353.303 kb on - strand, within HP15_2233at 2353.428 kb on + strand, within HP15_2233at 2353.428 kb on + strand, within HP15_2233at 2353.436 kb on - strand, within HP15_2233at 2353.502 kb on + strand, within HP15_2233at 2353.502 kb on + strand, within HP15_2233at 2353.599 kb on + strand, within HP15_2233at 2353.760 kb on + strandat 2353.901 kb on + strandat 2353.902 kb on + strandat 2353.909 kb on - strandat 2353.910 kb on - strandat 2354.010 kb on - strand, within HP15_2234at 2354.057 kb on + strand, within HP15_2234at 2354.065 kb on - strand, within HP15_2234at 2354.380 kb on + strand, within HP15_2234at 2354.398 kb on + strand, within HP15_2234at 2354.475 kb on + strand, within HP15_2234at 2354.563 kb on + strand, within HP15_2234at 2354.631 kb on + strand, within HP15_2234at 2354.636 kb on + strand, within HP15_2234at 2354.692 kb on + strand, within HP15_2234at 2354.738 kb on - strand, within HP15_2234at 2354.738 kb on - strand, within HP15_2234at 2354.828 kb on + strand, within HP15_2234at 2354.828 kb on + strand, within HP15_2234at 2354.876 kb on - strandat 2354.919 kb on - strandat 2354.920 kb on - strandat 2354.958 kb on + strandat 2354.970 kb on + strandat 2355.007 kb on - strandat 2355.099 kb on + strandat 2355.144 kb on + strandat 2355.164 kb on - strandat 2355.262 kb on - strandat 2355.265 kb on + strandat 2355.419 kb on + strandat 2355.637 kb on - strandat 2355.934 kb on - strand, within HP15_2235at 2355.950 kb on + strand, within HP15_2235

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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2,352,999 - HP15_2233 0.38 +0.0
2,353,026 + HP15_2233 0.40 +1.9
2,353,180 + HP15_2233 0.51 -0.7
2,353,256 + HP15_2233 0.57 -0.3
2,353,303 - HP15_2233 0.61 +0.4
2,353,303 - HP15_2233 0.61 +0.3
2,353,428 + HP15_2233 0.70 -0.3
2,353,428 + HP15_2233 0.70 +2.0
2,353,436 - HP15_2233 0.71 -0.6
2,353,502 + HP15_2233 0.76 +0.1
2,353,502 + HP15_2233 0.76 +2.9
2,353,599 + HP15_2233 0.83 -0.4
2,353,760 + -1.6
2,353,901 + +0.1
2,353,902 + +0.3
2,353,909 - -0.5
2,353,910 - +0.7
2,354,010 - HP15_2234 0.13 -0.2
2,354,057 + HP15_2234 0.17 -0.9
2,354,065 - HP15_2234 0.18 +1.0
2,354,380 + HP15_2234 0.47 +0.6
2,354,398 + HP15_2234 0.48 -0.3
2,354,475 + HP15_2234 0.55 -1.2
2,354,563 + HP15_2234 0.63 -0.4
2,354,631 + HP15_2234 0.69 +1.3
2,354,636 + HP15_2234 0.70 -0.4
2,354,692 + HP15_2234 0.75 -0.4
2,354,738 - HP15_2234 0.79 +0.5
2,354,738 - HP15_2234 0.79 -0.3
2,354,828 + HP15_2234 0.87 +0.1
2,354,828 + HP15_2234 0.87 -0.4
2,354,876 - +0.5
2,354,919 - +1.1
2,354,920 - +0.4
2,354,958 + -0.0
2,354,970 + -1.2
2,355,007 - -0.8
2,355,099 + -0.5
2,355,144 + -0.5
2,355,164 - -0.3
2,355,262 - -0.2
2,355,265 + -0.4
2,355,419 + +1.1
2,355,637 - +1.3
2,355,934 - HP15_2235 0.27 +0.4
2,355,950 + HP15_2235 0.29 -0.3

Or see this region's nucleotide sequence