Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1352 and HP15_1353 are separated by 70 nucleotides HP15_1353 and HP15_1354 are separated by 35 nucleotides HP15_1354 and HP15_1355 are separated by 15 nucleotides
HP15_1352: HP15_1352 - peptidase S16, lon domain protein, at 1,420,436 to 1,422,835
_1352
HP15_1353: HP15_1353 - UspA domain protein, at 1,422,906 to 1,423,694
_1353
HP15_1354: HP15_1354 - divalent heavy-metal cations transporter, at 1,423,730 to 1,424,449
_1354
HP15_1355: HP15_1355 - cell division protein FtsH, at 1,424,465 to 1,426,378
_1355
Position (kb)
1422
1423
1424 Strain fitness (log2 ratio)
-1
0
1
2 at 1421.944 kb on - strand, within HP15_1352 at 1421.946 kb on + strand, within HP15_1352 at 1421.958 kb on + strand, within HP15_1352 at 1421.958 kb on + strand, within HP15_1352 at 1422.123 kb on + strand, within HP15_1352 at 1422.123 kb on - strand, within HP15_1352 at 1422.138 kb on + strand, within HP15_1352 at 1422.138 kb on + strand, within HP15_1352 at 1422.146 kb on - strand, within HP15_1352 at 1422.209 kb on - strand, within HP15_1352 at 1422.311 kb on + strand, within HP15_1352 at 1422.311 kb on + strand, within HP15_1352 at 1422.338 kb on + strand, within HP15_1352 at 1422.343 kb on + strand, within HP15_1352 at 1422.405 kb on - strand, within HP15_1352 at 1422.575 kb on + strand, within HP15_1352 at 1422.877 kb on + strand at 1422.916 kb on - strand at 1422.916 kb on - strand at 1422.916 kb on - strand at 1422.926 kb on - strand at 1422.998 kb on + strand, within HP15_1353 at 1423.121 kb on + strand, within HP15_1353 at 1423.254 kb on - strand, within HP15_1353 at 1423.351 kb on + strand, within HP15_1353 at 1423.359 kb on - strand, within HP15_1353 at 1423.359 kb on - strand, within HP15_1353 at 1423.361 kb on - strand, within HP15_1353 at 1423.398 kb on - strand, within HP15_1353 at 1423.406 kb on - strand, within HP15_1353 at 1423.461 kb on + strand, within HP15_1353 at 1423.537 kb on + strand, within HP15_1353 at 1423.645 kb on - strand at 1423.663 kb on + strand at 1423.742 kb on - strand at 1423.937 kb on - strand, within HP15_1354 at 1423.946 kb on - strand, within HP15_1354 at 1424.040 kb on - strand, within HP15_1354 at 1424.106 kb on - strand, within HP15_1354 at 1424.113 kb on + strand, within HP15_1354 at 1424.128 kb on - strand, within HP15_1354 at 1424.155 kb on + strand, within HP15_1354 at 1424.204 kb on - strand, within HP15_1354 at 1424.212 kb on + strand, within HP15_1354 at 1424.240 kb on + strand, within HP15_1354 at 1424.288 kb on + strand, within HP15_1354 at 1424.367 kb on + strand, within HP15_1354 at 1424.410 kb on + strand at 1424.415 kb on + strand at 1424.415 kb on + strand at 1424.423 kb on - strand at 1424.423 kb on - strand at 1424.423 kb on - strand at 1424.438 kb on - strand at 1424.544 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 1,421,944 - HP15_1352 0.63 -0.4 1,421,946 + HP15_1352 0.63 +0.7 1,421,958 + HP15_1352 0.63 +0.2 1,421,958 + HP15_1352 0.63 +0.6 1,422,123 + HP15_1352 0.70 -0.4 1,422,123 - HP15_1352 0.70 -0.6 1,422,138 + HP15_1352 0.71 -0.3 1,422,138 + HP15_1352 0.71 +0.1 1,422,146 - HP15_1352 0.71 +0.7 1,422,209 - HP15_1352 0.74 -0.3 1,422,311 + HP15_1352 0.78 +0.5 1,422,311 + HP15_1352 0.78 -0.4 1,422,338 + HP15_1352 0.79 +0.9 1,422,343 + HP15_1352 0.79 +0.1 1,422,405 - HP15_1352 0.82 -0.8 1,422,575 + HP15_1352 0.89 +1.4 1,422,877 + -0.9 1,422,916 - +0.3 1,422,916 - -0.1 1,422,916 - +1.5 1,422,926 - +0.3 1,422,998 + HP15_1353 0.12 -0.8 1,423,121 + HP15_1353 0.27 -0.8 1,423,254 - HP15_1353 0.44 -1.3 1,423,351 + HP15_1353 0.56 -0.2 1,423,359 - HP15_1353 0.57 +1.0 1,423,359 - HP15_1353 0.57 -0.8 1,423,361 - HP15_1353 0.58 +0.1 1,423,398 - HP15_1353 0.62 -0.1 1,423,406 - HP15_1353 0.63 -0.8 1,423,461 + HP15_1353 0.70 +0.7 1,423,537 + HP15_1353 0.80 -0.7 1,423,645 - -0.4 1,423,663 + +0.5 1,423,742 - -1.7 1,423,937 - HP15_1354 0.29 -0.1 1,423,946 - HP15_1354 0.30 -0.7 1,424,040 - HP15_1354 0.43 +0.6 1,424,106 - HP15_1354 0.52 +0.3 1,424,113 + HP15_1354 0.53 -0.3 1,424,128 - HP15_1354 0.55 +0.9 1,424,155 + HP15_1354 0.59 -0.6 1,424,204 - HP15_1354 0.66 +0.6 1,424,212 + HP15_1354 0.67 +1.3 1,424,240 + HP15_1354 0.71 +2.2 1,424,288 + HP15_1354 0.78 +0.7 1,424,367 + HP15_1354 0.88 -1.4 1,424,410 + -1.1 1,424,415 + -0.3 1,424,415 + -0.6 1,424,423 - -1.0 1,424,423 - -0.6 1,424,423 - +0.7 1,424,438 - -0.4 1,424,544 + +0.1
Or see this region's nucleotide sequence