Strain Fitness in Marinobacter adhaerens HP15 around HP15_1353

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1352 and HP15_1353 are separated by 70 nucleotidesHP15_1353 and HP15_1354 are separated by 35 nucleotidesHP15_1354 and HP15_1355 are separated by 15 nucleotides HP15_1352: HP15_1352 - peptidase S16, lon domain protein, at 1,420,436 to 1,422,835 _1352 HP15_1353: HP15_1353 - UspA domain protein, at 1,422,906 to 1,423,694 _1353 HP15_1354: HP15_1354 - divalent heavy-metal cations transporter, at 1,423,730 to 1,424,449 _1354 HP15_1355: HP15_1355 - cell division protein FtsH, at 1,424,465 to 1,426,378 _1355 Position (kb) 1422 1423 1424Strain fitness (log2 ratio) -1 0 1 2at 1421.944 kb on - strand, within HP15_1352at 1421.946 kb on + strand, within HP15_1352at 1421.958 kb on + strand, within HP15_1352at 1421.958 kb on + strand, within HP15_1352at 1422.123 kb on + strand, within HP15_1352at 1422.123 kb on - strand, within HP15_1352at 1422.138 kb on + strand, within HP15_1352at 1422.138 kb on + strand, within HP15_1352at 1422.146 kb on - strand, within HP15_1352at 1422.209 kb on - strand, within HP15_1352at 1422.311 kb on + strand, within HP15_1352at 1422.311 kb on + strand, within HP15_1352at 1422.338 kb on + strand, within HP15_1352at 1422.343 kb on + strand, within HP15_1352at 1422.405 kb on - strand, within HP15_1352at 1422.575 kb on + strand, within HP15_1352at 1422.877 kb on + strandat 1422.916 kb on - strandat 1422.916 kb on - strandat 1422.916 kb on - strandat 1422.926 kb on - strandat 1422.998 kb on + strand, within HP15_1353at 1423.121 kb on + strand, within HP15_1353at 1423.254 kb on - strand, within HP15_1353at 1423.351 kb on + strand, within HP15_1353at 1423.359 kb on - strand, within HP15_1353at 1423.359 kb on - strand, within HP15_1353at 1423.361 kb on - strand, within HP15_1353at 1423.398 kb on - strand, within HP15_1353at 1423.406 kb on - strand, within HP15_1353at 1423.461 kb on + strand, within HP15_1353at 1423.537 kb on + strand, within HP15_1353at 1423.645 kb on - strandat 1423.663 kb on + strandat 1423.742 kb on - strandat 1423.937 kb on - strand, within HP15_1354at 1423.946 kb on - strand, within HP15_1354at 1424.040 kb on - strand, within HP15_1354at 1424.106 kb on - strand, within HP15_1354at 1424.113 kb on + strand, within HP15_1354at 1424.128 kb on - strand, within HP15_1354at 1424.155 kb on + strand, within HP15_1354at 1424.204 kb on - strand, within HP15_1354at 1424.212 kb on + strand, within HP15_1354at 1424.240 kb on + strand, within HP15_1354at 1424.288 kb on + strand, within HP15_1354at 1424.367 kb on + strand, within HP15_1354at 1424.410 kb on + strandat 1424.415 kb on + strandat 1424.415 kb on + strandat 1424.423 kb on - strandat 1424.423 kb on - strandat 1424.423 kb on - strandat 1424.438 kb on - strandat 1424.544 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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1,421,944 - HP15_1352 0.63 -0.4
1,421,946 + HP15_1352 0.63 +0.7
1,421,958 + HP15_1352 0.63 +0.2
1,421,958 + HP15_1352 0.63 +0.6
1,422,123 + HP15_1352 0.70 -0.4
1,422,123 - HP15_1352 0.70 -0.6
1,422,138 + HP15_1352 0.71 -0.3
1,422,138 + HP15_1352 0.71 +0.1
1,422,146 - HP15_1352 0.71 +0.7
1,422,209 - HP15_1352 0.74 -0.3
1,422,311 + HP15_1352 0.78 +0.5
1,422,311 + HP15_1352 0.78 -0.4
1,422,338 + HP15_1352 0.79 +0.9
1,422,343 + HP15_1352 0.79 +0.1
1,422,405 - HP15_1352 0.82 -0.8
1,422,575 + HP15_1352 0.89 +1.4
1,422,877 + -0.9
1,422,916 - +0.3
1,422,916 - -0.1
1,422,916 - +1.5
1,422,926 - +0.3
1,422,998 + HP15_1353 0.12 -0.8
1,423,121 + HP15_1353 0.27 -0.8
1,423,254 - HP15_1353 0.44 -1.3
1,423,351 + HP15_1353 0.56 -0.2
1,423,359 - HP15_1353 0.57 +1.0
1,423,359 - HP15_1353 0.57 -0.8
1,423,361 - HP15_1353 0.58 +0.1
1,423,398 - HP15_1353 0.62 -0.1
1,423,406 - HP15_1353 0.63 -0.8
1,423,461 + HP15_1353 0.70 +0.7
1,423,537 + HP15_1353 0.80 -0.7
1,423,645 - -0.4
1,423,663 + +0.5
1,423,742 - -1.7
1,423,937 - HP15_1354 0.29 -0.1
1,423,946 - HP15_1354 0.30 -0.7
1,424,040 - HP15_1354 0.43 +0.6
1,424,106 - HP15_1354 0.52 +0.3
1,424,113 + HP15_1354 0.53 -0.3
1,424,128 - HP15_1354 0.55 +0.9
1,424,155 + HP15_1354 0.59 -0.6
1,424,204 - HP15_1354 0.66 +0.6
1,424,212 + HP15_1354 0.67 +1.3
1,424,240 + HP15_1354 0.71 +2.2
1,424,288 + HP15_1354 0.78 +0.7
1,424,367 + HP15_1354 0.88 -1.4
1,424,410 + -1.1
1,424,415 + -0.3
1,424,415 + -0.6
1,424,423 - -1.0
1,424,423 - -0.6
1,424,423 - +0.7
1,424,438 - -0.4
1,424,544 + +0.1

Or see this region's nucleotide sequence