Strain Fitness in Marinobacter adhaerens HP15 around HP15_1341

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1340 and HP15_1341 overlap by 13 nucleotidesHP15_1341 and HP15_1342 are separated by 23 nucleotides HP15_1340: HP15_1340 - GCN5-related N-acetyltransferase, at 1,407,740 to 1,408,276 _1340 HP15_1341: HP15_1341 - succinylglutamate desuccinylase/aspartoacylase-like protein, at 1,408,264 to 1,409,367 _1341 HP15_1342: HP15_1342 - uncharacterized conserved protein UCP012666, at 1,409,391 to 1,410,875 _1342 Position (kb) 1408 1409 1410Strain fitness (log2 ratio) -2 -1 0 1 2at 1407.270 kb on + strandat 1407.291 kb on - strandat 1407.291 kb on - strandat 1407.291 kb on - strandat 1407.435 kb on + strandat 1407.440 kb on + strandat 1407.555 kb on + strandat 1407.605 kb on + strandat 1407.635 kb on - strandat 1407.643 kb on - strandat 1407.843 kb on + strand, within HP15_1340at 1408.134 kb on + strand, within HP15_1340at 1408.134 kb on + strand, within HP15_1340at 1408.136 kb on + strand, within HP15_1340at 1408.136 kb on + strand, within HP15_1340at 1408.144 kb on - strand, within HP15_1340at 1408.220 kb on - strand, within HP15_1340at 1408.220 kb on - strand, within HP15_1340at 1408.242 kb on - strandat 1408.384 kb on - strand, within HP15_1341at 1408.397 kb on + strand, within HP15_1341at 1408.457 kb on + strand, within HP15_1341at 1408.480 kb on - strand, within HP15_1341at 1408.558 kb on + strand, within HP15_1341at 1408.569 kb on + strand, within HP15_1341at 1408.701 kb on + strand, within HP15_1341at 1408.707 kb on - strand, within HP15_1341at 1408.751 kb on + strand, within HP15_1341at 1408.886 kb on + strand, within HP15_1341at 1408.916 kb on + strand, within HP15_1341at 1408.960 kb on + strand, within HP15_1341at 1409.118 kb on - strand, within HP15_1341at 1409.263 kb on - strandat 1409.496 kb on - strandat 1409.592 kb on + strand, within HP15_1342at 1409.636 kb on - strand, within HP15_1342at 1409.720 kb on + strand, within HP15_1342at 1409.823 kb on - strand, within HP15_1342at 1409.838 kb on + strand, within HP15_1342at 1409.838 kb on + strand, within HP15_1342at 1409.855 kb on + strand, within HP15_1342at 1409.888 kb on + strand, within HP15_1342at 1409.922 kb on + strand, within HP15_1342at 1410.095 kb on + strand, within HP15_1342at 1410.129 kb on - strand, within HP15_1342at 1410.216 kb on + strand, within HP15_1342

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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1,407,270 + -2.3
1,407,291 - +0.8
1,407,291 - -0.3
1,407,291 - +1.6
1,407,435 + +0.7
1,407,440 + -0.9
1,407,555 + +0.0
1,407,605 + +0.5
1,407,635 - +2.0
1,407,643 - +0.9
1,407,843 + HP15_1340 0.19 +1.2
1,408,134 + HP15_1340 0.73 +0.5
1,408,134 + HP15_1340 0.73 +1.7
1,408,136 + HP15_1340 0.74 +1.1
1,408,136 + HP15_1340 0.74 -0.8
1,408,144 - HP15_1340 0.75 +0.4
1,408,220 - HP15_1340 0.89 -0.2
1,408,220 - HP15_1340 0.89 -1.2
1,408,242 - -0.2
1,408,384 - HP15_1341 0.11 -1.1
1,408,397 + HP15_1341 0.12 +0.8
1,408,457 + HP15_1341 0.17 +0.2
1,408,480 - HP15_1341 0.20 +1.6
1,408,558 + HP15_1341 0.27 +0.3
1,408,569 + HP15_1341 0.28 -0.5
1,408,701 + HP15_1341 0.40 -0.3
1,408,707 - HP15_1341 0.40 -0.8
1,408,751 + HP15_1341 0.44 -0.9
1,408,886 + HP15_1341 0.56 -0.8
1,408,916 + HP15_1341 0.59 -1.1
1,408,960 + HP15_1341 0.63 -0.3
1,409,118 - HP15_1341 0.77 -1.0
1,409,263 - +1.0
1,409,496 - -0.9
1,409,592 + HP15_1342 0.14 -0.6
1,409,636 - HP15_1342 0.16 -0.5
1,409,720 + HP15_1342 0.22 -0.7
1,409,823 - HP15_1342 0.29 +0.1
1,409,838 + HP15_1342 0.30 -0.1
1,409,838 + HP15_1342 0.30 +0.1
1,409,855 + HP15_1342 0.31 +0.6
1,409,888 + HP15_1342 0.33 +1.3
1,409,922 + HP15_1342 0.36 +2.5
1,410,095 + HP15_1342 0.47 -0.0
1,410,129 - HP15_1342 0.50 +0.9
1,410,216 + HP15_1342 0.56 +0.8

Or see this region's nucleotide sequence