Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1340 and HP15_1341 overlap by 13 nucleotides HP15_1341 and HP15_1342 are separated by 23 nucleotides
HP15_1340: HP15_1340 - GCN5-related N-acetyltransferase, at 1,407,740 to 1,408,276
_1340
HP15_1341: HP15_1341 - succinylglutamate desuccinylase/aspartoacylase-like protein, at 1,408,264 to 1,409,367
_1341
HP15_1342: HP15_1342 - uncharacterized conserved protein UCP012666, at 1,409,391 to 1,410,875
_1342
Position (kb)
1408
1409
1410 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1407.270 kb on + strand at 1407.291 kb on - strand at 1407.291 kb on - strand at 1407.291 kb on - strand at 1407.435 kb on + strand at 1407.440 kb on + strand at 1407.555 kb on + strand at 1407.605 kb on + strand at 1407.635 kb on - strand at 1407.643 kb on - strand at 1407.843 kb on + strand, within HP15_1340 at 1408.134 kb on + strand, within HP15_1340 at 1408.134 kb on + strand, within HP15_1340 at 1408.136 kb on + strand, within HP15_1340 at 1408.136 kb on + strand, within HP15_1340 at 1408.144 kb on - strand, within HP15_1340 at 1408.220 kb on - strand, within HP15_1340 at 1408.220 kb on - strand, within HP15_1340 at 1408.242 kb on - strand at 1408.384 kb on - strand, within HP15_1341 at 1408.397 kb on + strand, within HP15_1341 at 1408.457 kb on + strand, within HP15_1341 at 1408.480 kb on - strand, within HP15_1341 at 1408.558 kb on + strand, within HP15_1341 at 1408.569 kb on + strand, within HP15_1341 at 1408.701 kb on + strand, within HP15_1341 at 1408.707 kb on - strand, within HP15_1341 at 1408.751 kb on + strand, within HP15_1341 at 1408.886 kb on + strand, within HP15_1341 at 1408.916 kb on + strand, within HP15_1341 at 1408.960 kb on + strand, within HP15_1341 at 1409.118 kb on - strand, within HP15_1341 at 1409.263 kb on - strand at 1409.496 kb on - strand at 1409.592 kb on + strand, within HP15_1342 at 1409.636 kb on - strand, within HP15_1342 at 1409.720 kb on + strand, within HP15_1342 at 1409.823 kb on - strand, within HP15_1342 at 1409.838 kb on + strand, within HP15_1342 at 1409.838 kb on + strand, within HP15_1342 at 1409.855 kb on + strand, within HP15_1342 at 1409.888 kb on + strand, within HP15_1342 at 1409.922 kb on + strand, within HP15_1342 at 1410.095 kb on + strand, within HP15_1342 at 1410.129 kb on - strand, within HP15_1342 at 1410.216 kb on + strand, within HP15_1342
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 1,407,270 + -2.3 1,407,291 - +0.8 1,407,291 - -0.3 1,407,291 - +1.6 1,407,435 + +0.7 1,407,440 + -0.9 1,407,555 + +0.0 1,407,605 + +0.5 1,407,635 - +2.0 1,407,643 - +0.9 1,407,843 + HP15_1340 0.19 +1.2 1,408,134 + HP15_1340 0.73 +0.5 1,408,134 + HP15_1340 0.73 +1.7 1,408,136 + HP15_1340 0.74 +1.1 1,408,136 + HP15_1340 0.74 -0.8 1,408,144 - HP15_1340 0.75 +0.4 1,408,220 - HP15_1340 0.89 -0.2 1,408,220 - HP15_1340 0.89 -1.2 1,408,242 - -0.2 1,408,384 - HP15_1341 0.11 -1.1 1,408,397 + HP15_1341 0.12 +0.8 1,408,457 + HP15_1341 0.17 +0.2 1,408,480 - HP15_1341 0.20 +1.6 1,408,558 + HP15_1341 0.27 +0.3 1,408,569 + HP15_1341 0.28 -0.5 1,408,701 + HP15_1341 0.40 -0.3 1,408,707 - HP15_1341 0.40 -0.8 1,408,751 + HP15_1341 0.44 -0.9 1,408,886 + HP15_1341 0.56 -0.8 1,408,916 + HP15_1341 0.59 -1.1 1,408,960 + HP15_1341 0.63 -0.3 1,409,118 - HP15_1341 0.77 -1.0 1,409,263 - +1.0 1,409,496 - -0.9 1,409,592 + HP15_1342 0.14 -0.6 1,409,636 - HP15_1342 0.16 -0.5 1,409,720 + HP15_1342 0.22 -0.7 1,409,823 - HP15_1342 0.29 +0.1 1,409,838 + HP15_1342 0.30 -0.1 1,409,838 + HP15_1342 0.30 +0.1 1,409,855 + HP15_1342 0.31 +0.6 1,409,888 + HP15_1342 0.33 +1.3 1,409,922 + HP15_1342 0.36 +2.5 1,410,095 + HP15_1342 0.47 -0.0 1,410,129 - HP15_1342 0.50 +0.9 1,410,216 + HP15_1342 0.56 +0.8
Or see this region's nucleotide sequence