Strain Fitness in Marinobacter adhaerens HP15 around HP15_1259

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1258 and HP15_1259 are separated by 52 nucleotidesHP15_1259 and HP15_1260 are separated by 49 nucleotidesHP15_1260 and HP15_1261 overlap by 4 nucleotides HP15_1258: HP15_1258 - isoquinoline 1-oxidoreductase, beta subunit, at 1,317,188 to 1,319,392 _1258 HP15_1259: HP15_1259 - xanthine dehydrogenase accessory factor, at 1,319,445 to 1,320,380 _1259 HP15_1260: HP15_1260 - sugar aldolase, at 1,320,430 to 1,321,056 _1260 HP15_1261: HP15_1261 - acireductone dioxygenase, ARD, at 1,321,053 to 1,321,613 _1261 Position (kb) 1319 1320 1321Strain fitness (log2 ratio) -3 -2 -1 0 1at 1318.524 kb on - strand, within HP15_1258at 1318.542 kb on - strand, within HP15_1258at 1318.644 kb on - strand, within HP15_1258at 1318.743 kb on + strand, within HP15_1258at 1318.783 kb on - strand, within HP15_1258at 1318.963 kb on + strand, within HP15_1258at 1318.995 kb on + strand, within HP15_1258at 1319.098 kb on + strand, within HP15_1258at 1319.192 kb on - strandat 1319.321 kb on + strandat 1319.321 kb on + strandat 1319.326 kb on + strandat 1319.355 kb on - strandat 1319.441 kb on - strandat 1319.535 kb on - strandat 1319.584 kb on + strand, within HP15_1259at 1319.621 kb on - strand, within HP15_1259at 1319.621 kb on - strand, within HP15_1259at 1319.687 kb on + strand, within HP15_1259at 1319.687 kb on + strand, within HP15_1259at 1319.743 kb on - strand, within HP15_1259at 1319.983 kb on + strand, within HP15_1259at 1320.085 kb on - strand, within HP15_1259at 1320.112 kb on + strand, within HP15_1259at 1320.112 kb on + strand, within HP15_1259at 1320.141 kb on - strand, within HP15_1259at 1320.158 kb on + strand, within HP15_1259at 1320.158 kb on + strand, within HP15_1259at 1320.361 kb on + strandat 1320.369 kb on - strandat 1320.397 kb on + strandat 1320.591 kb on + strand, within HP15_1260at 1320.599 kb on - strand, within HP15_1260at 1320.695 kb on - strand, within HP15_1260at 1320.695 kb on - strand, within HP15_1260at 1320.706 kb on - strand, within HP15_1260at 1320.715 kb on + strand, within HP15_1260at 1320.791 kb on + strand, within HP15_1260at 1320.791 kb on + strand, within HP15_1260at 1320.955 kb on + strand, within HP15_1260at 1320.963 kb on - strand, within HP15_1260at 1320.997 kb on + strandat 1321.054 kb on + strandat 1321.054 kb on + strandat 1321.106 kb on - strandat 1321.217 kb on + strand, within HP15_1261

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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1,318,524 - HP15_1258 0.61 +1.3
1,318,542 - HP15_1258 0.61 +0.8
1,318,644 - HP15_1258 0.66 +0.3
1,318,743 + HP15_1258 0.71 -0.8
1,318,783 - HP15_1258 0.72 +0.9
1,318,963 + HP15_1258 0.80 -0.8
1,318,995 + HP15_1258 0.82 +0.2
1,319,098 + HP15_1258 0.87 +0.7
1,319,192 - +0.9
1,319,321 + +0.9
1,319,321 + +0.2
1,319,326 + +0.1
1,319,355 - +1.2
1,319,441 - -0.6
1,319,535 - -0.1
1,319,584 + HP15_1259 0.15 -0.4
1,319,621 - HP15_1259 0.19 +1.3
1,319,621 - HP15_1259 0.19 +1.1
1,319,687 + HP15_1259 0.26 +1.4
1,319,687 + HP15_1259 0.26 +1.5
1,319,743 - HP15_1259 0.32 +0.5
1,319,983 + HP15_1259 0.57 -1.1
1,320,085 - HP15_1259 0.68 -0.1
1,320,112 + HP15_1259 0.71 -0.0
1,320,112 + HP15_1259 0.71 -1.5
1,320,141 - HP15_1259 0.74 +1.2
1,320,158 + HP15_1259 0.76 +1.0
1,320,158 + HP15_1259 0.76 +0.2
1,320,361 + +1.1
1,320,369 - -0.9
1,320,397 + +1.3
1,320,591 + HP15_1260 0.26 -0.0
1,320,599 - HP15_1260 0.27 -0.5
1,320,695 - HP15_1260 0.42 +1.4
1,320,695 - HP15_1260 0.42 +1.5
1,320,706 - HP15_1260 0.44 -1.1
1,320,715 + HP15_1260 0.45 +0.1
1,320,791 + HP15_1260 0.58 -0.3
1,320,791 + HP15_1260 0.58 +1.2
1,320,955 + HP15_1260 0.84 -0.7
1,320,963 - HP15_1260 0.85 +0.1
1,320,997 + -0.1
1,321,054 + +1.0
1,321,054 + -3.4
1,321,106 - +0.1
1,321,217 + HP15_1261 0.29 +0.6

Or see this region's nucleotide sequence