Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1120 and HP15_1121 are separated by 169 nucleotides HP15_1121 and HP15_1122 overlap by 4 nucleotides HP15_1122 and HP15_1123 are separated by 293 nucleotides HP15_1123 and HP15_1124 are separated by 15 nucleotides
HP15_1120: HP15_1120 - alpha/beta hydrolase fold protein, at 1,148,733 to 1,149,440
_1120
HP15_1121: HP15_1121 - thioesterase superfamily protein, at 1,149,610 to 1,150,116
_1121
HP15_1122: HP15_1122 - conserved hypothetical protein, thioesterase superfamily, at 1,150,113 to 1,150,562
_1122
HP15_1123: HP15_1123 - transcriptional regulator, TetR family, at 1,150,856 to 1,151,470
_1123
HP15_1124: HP15_1124 - conserved hypothetical protein, at 1,151,486 to 1,152,439
_1124
Position (kb)
1150
1151 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1149.315 kb on - strand, within HP15_1120 at 1149.333 kb on - strand, within HP15_1120 at 1149.338 kb on + strand, within HP15_1120 at 1149.346 kb on - strand, within HP15_1120 at 1149.346 kb on - strand, within HP15_1120 at 1149.346 kb on - strand, within HP15_1120 at 1149.531 kb on - strand at 1149.536 kb on - strand at 1149.621 kb on - strand at 1149.698 kb on + strand, within HP15_1121 at 1149.818 kb on + strand, within HP15_1121 at 1149.948 kb on + strand, within HP15_1121 at 1149.956 kb on - strand, within HP15_1121 at 1149.966 kb on - strand, within HP15_1121 at 1149.996 kb on - strand, within HP15_1121 at 1150.002 kb on + strand, within HP15_1121 at 1150.095 kb on - strand at 1150.122 kb on - strand at 1150.212 kb on - strand, within HP15_1122 at 1150.214 kb on + strand, within HP15_1122 at 1150.404 kb on + strand, within HP15_1122 at 1150.454 kb on + strand, within HP15_1122 at 1150.466 kb on + strand, within HP15_1122 at 1150.484 kb on - strand, within HP15_1122 at 1150.522 kb on - strand at 1150.582 kb on + strand at 1150.587 kb on - strand at 1150.878 kb on - strand at 1150.907 kb on + strand at 1150.920 kb on - strand, within HP15_1123 at 1151.073 kb on + strand, within HP15_1123 at 1151.097 kb on - strand, within HP15_1123 at 1151.254 kb on - strand, within HP15_1123 at 1151.343 kb on + strand, within HP15_1123 at 1151.343 kb on + strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.356 kb on + strand, within HP15_1123 at 1151.409 kb on + strand at 1151.446 kb on + strand at 1151.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 1,149,315 - HP15_1120 0.82 +1.1 1,149,333 - HP15_1120 0.85 -0.7 1,149,338 + HP15_1120 0.85 -0.2 1,149,346 - HP15_1120 0.87 +0.7 1,149,346 - HP15_1120 0.87 -0.9 1,149,346 - HP15_1120 0.87 -2.0 1,149,531 - -0.2 1,149,536 - -0.9 1,149,621 - +1.1 1,149,698 + HP15_1121 0.17 +1.1 1,149,818 + HP15_1121 0.41 +1.2 1,149,948 + HP15_1121 0.67 -0.1 1,149,956 - HP15_1121 0.68 -0.3 1,149,966 - HP15_1121 0.70 +1.2 1,149,996 - HP15_1121 0.76 -0.9 1,150,002 + HP15_1121 0.77 -0.9 1,150,095 - +0.3 1,150,122 - -0.5 1,150,212 - HP15_1122 0.22 -0.5 1,150,214 + HP15_1122 0.22 -1.1 1,150,404 + HP15_1122 0.65 -0.3 1,150,454 + HP15_1122 0.76 -0.9 1,150,466 + HP15_1122 0.78 -1.1 1,150,484 - HP15_1122 0.82 +0.5 1,150,522 - -0.2 1,150,582 + -0.9 1,150,587 - +0.3 1,150,878 - -0.3 1,150,907 + +2.2 1,150,920 - HP15_1123 0.10 +0.0 1,151,073 + HP15_1123 0.35 +0.6 1,151,097 - HP15_1123 0.39 -0.5 1,151,254 - HP15_1123 0.65 -0.5 1,151,343 + HP15_1123 0.79 -0.1 1,151,343 + HP15_1123 0.79 -0.3 1,151,351 - HP15_1123 0.80 -0.2 1,151,351 - HP15_1123 0.80 +1.9 1,151,351 - HP15_1123 0.80 +0.9 1,151,351 - HP15_1123 0.80 +0.1 1,151,351 - HP15_1123 0.80 -0.7 1,151,356 + HP15_1123 0.81 -1.0 1,151,409 + +0.1 1,151,446 + +1.6 1,151,457 - -0.3
Or see this region's nucleotide sequence