Strain Fitness in Marinobacter adhaerens HP15 around HP15_109

Experiment: DinoMM minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_108 and HP15_109 are separated by 49 nucleotidesHP15_109 and HP15_110 are separated by 14 nucleotides HP15_108: HP15_108 - outer membrane efflux protein, at 111,522 to 112,619 _108 HP15_109: HP15_109 - cation efflux family protein, at 112,669 to 113,853 _109 HP15_110: HP15_110 - heavy metal efflux pump, CzcA family, at 113,868 to 116,975 _110 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1 2at 111.683 kb on + strand, within HP15_108at 111.698 kb on - strand, within HP15_108at 111.706 kb on + strand, within HP15_108at 111.825 kb on - strand, within HP15_108at 111.831 kb on - strand, within HP15_108at 111.838 kb on + strand, within HP15_108at 111.862 kb on - strand, within HP15_108at 111.878 kb on + strand, within HP15_108at 111.911 kb on - strand, within HP15_108at 111.935 kb on + strand, within HP15_108at 111.985 kb on + strand, within HP15_108at 112.003 kb on - strand, within HP15_108at 112.008 kb on - strand, within HP15_108at 112.011 kb on + strand, within HP15_108at 112.024 kb on - strand, within HP15_108at 112.024 kb on - strand, within HP15_108at 112.028 kb on + strand, within HP15_108at 112.028 kb on + strand, within HP15_108at 112.028 kb on + strand, within HP15_108at 112.083 kb on - strand, within HP15_108at 112.093 kb on - strand, within HP15_108at 112.151 kb on + strand, within HP15_108at 112.175 kb on + strand, within HP15_108at 112.249 kb on - strand, within HP15_108at 112.360 kb on + strand, within HP15_108at 112.378 kb on - strand, within HP15_108at 112.480 kb on + strand, within HP15_108at 112.488 kb on - strand, within HP15_108at 112.547 kb on + strandat 112.547 kb on + strandat 112.610 kb on - strandat 112.649 kb on + strandat 112.718 kb on + strandat 112.724 kb on - strandat 112.770 kb on + strandat 112.796 kb on + strand, within HP15_109at 112.797 kb on - strand, within HP15_109at 112.823 kb on + strand, within HP15_109at 112.826 kb on - strand, within HP15_109at 112.828 kb on + strand, within HP15_109at 112.831 kb on - strand, within HP15_109at 112.831 kb on - strand, within HP15_109at 112.831 kb on - strand, within HP15_109at 112.856 kb on + strand, within HP15_109at 112.856 kb on + strand, within HP15_109at 112.856 kb on + strand, within HP15_109at 112.864 kb on - strand, within HP15_109at 112.864 kb on - strand, within HP15_109at 112.964 kb on - strand, within HP15_109at 113.010 kb on + strand, within HP15_109at 113.028 kb on - strand, within HP15_109at 113.028 kb on - strand, within HP15_109at 113.028 kb on - strand, within HP15_109at 113.033 kb on - strand, within HP15_109at 113.131 kb on + strand, within HP15_109at 113.255 kb on + strand, within HP15_109at 113.287 kb on - strand, within HP15_109at 113.292 kb on - strand, within HP15_109at 113.297 kb on - strand, within HP15_109at 113.320 kb on + strand, within HP15_109at 113.327 kb on + strand, within HP15_109at 113.334 kb on - strand, within HP15_109at 113.336 kb on + strand, within HP15_109at 113.336 kb on + strand, within HP15_109at 113.349 kb on - strand, within HP15_109at 113.368 kb on + strand, within HP15_109at 113.434 kb on + strand, within HP15_109at 113.434 kb on + strand, within HP15_109at 113.434 kb on + strand, within HP15_109at 113.474 kb on + strand, within HP15_109at 113.492 kb on + strand, within HP15_109at 113.539 kb on + strand, within HP15_109at 113.627 kb on - strand, within HP15_109at 113.636 kb on + strand, within HP15_109at 113.705 kb on - strand, within HP15_109at 113.711 kb on + strand, within HP15_109at 113.749 kb on - strandat 113.782 kb on + strandat 113.803 kb on - strandat 113.805 kb on + strandat 113.848 kb on + strandat 113.848 kb on + strandat 113.848 kb on + strandat 113.848 kb on + strandat 113.856 kb on - strandat 113.856 kb on - strandat 113.856 kb on - strandat 113.856 kb on - strandat 113.904 kb on + strandat 114.006 kb on + strandat 114.009 kb on - strandat 114.025 kb on + strandat 114.070 kb on + strandat 114.179 kb on - strand, within HP15_110at 114.212 kb on - strand, within HP15_110at 114.248 kb on + strand, within HP15_110at 114.274 kb on + strand, within HP15_110at 114.292 kb on - strand, within HP15_110at 114.348 kb on + strand, within HP15_110at 114.348 kb on + strand, within HP15_110at 114.348 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.405 kb on - strand, within HP15_110at 114.421 kb on + strand, within HP15_110at 114.437 kb on + strand, within HP15_110at 114.445 kb on - strand, within HP15_110at 114.478 kb on - strand, within HP15_110at 114.554 kb on + strand, within HP15_110at 114.575 kb on + strand, within HP15_110at 114.591 kb on + strand, within HP15_110at 114.629 kb on + strand, within HP15_110at 114.629 kb on + strand, within HP15_110at 114.629 kb on + strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.677 kb on + strand, within HP15_110at 114.682 kb on + strand, within HP15_110at 114.706 kb on + strand, within HP15_110at 114.706 kb on + strand, within HP15_110at 114.711 kb on + strand, within HP15_110at 114.714 kb on - strand, within HP15_110at 114.714 kb on - strand, within HP15_110at 114.716 kb on + strand, within HP15_110at 114.724 kb on - strand, within HP15_110at 114.724 kb on - strand, within HP15_110at 114.805 kb on + strand, within HP15_110at 114.851 kb on + strand, within HP15_110

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media
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111,683 + HP15_108 0.15 -0.3
111,698 - HP15_108 0.16 -1.8
111,706 + HP15_108 0.17 -0.4
111,825 - HP15_108 0.28 +0.8
111,831 - HP15_108 0.28 -0.1
111,838 + HP15_108 0.29 -0.9
111,862 - HP15_108 0.31 -1.6
111,878 + HP15_108 0.32 +0.4
111,911 - HP15_108 0.35 -0.7
111,935 + HP15_108 0.38 +0.6
111,985 + HP15_108 0.42 -0.7
112,003 - HP15_108 0.44 -0.8
112,008 - HP15_108 0.44 +1.0
112,011 + HP15_108 0.45 +0.1
112,024 - HP15_108 0.46 -0.2
112,024 - HP15_108 0.46 -1.6
112,028 + HP15_108 0.46 -0.6
112,028 + HP15_108 0.46 -0.7
112,028 + HP15_108 0.46 -1.5
112,083 - HP15_108 0.51 -0.7
112,093 - HP15_108 0.52 +0.9
112,151 + HP15_108 0.57 +0.7
112,175 + HP15_108 0.59 -0.1
112,249 - HP15_108 0.66 -0.3
112,360 + HP15_108 0.76 -0.4
112,378 - HP15_108 0.78 -1.6
112,480 + HP15_108 0.87 +0.7
112,488 - HP15_108 0.88 -1.5
112,547 + -0.8
112,547 + -0.3
112,610 - +1.1
112,649 + -0.7
112,718 + -0.3
112,724 - -1.3
112,770 + +1.0
112,796 + HP15_109 0.11 +0.0
112,797 - HP15_109 0.11 -0.7
112,823 + HP15_109 0.13 -0.2
112,826 - HP15_109 0.13 -0.4
112,828 + HP15_109 0.13 +2.5
112,831 - HP15_109 0.14 -0.3
112,831 - HP15_109 0.14 -0.4
112,831 - HP15_109 0.14 +1.0
112,856 + HP15_109 0.16 +1.3
112,856 + HP15_109 0.16 +0.3
112,856 + HP15_109 0.16 -0.4
112,864 - HP15_109 0.16 -1.3
112,864 - HP15_109 0.16 -0.7
112,964 - HP15_109 0.25 +0.1
113,010 + HP15_109 0.29 -0.6
113,028 - HP15_109 0.30 -0.6
113,028 - HP15_109 0.30 -1.5
113,028 - HP15_109 0.30 -0.4
113,033 - HP15_109 0.31 +0.2
113,131 + HP15_109 0.39 -1.4
113,255 + HP15_109 0.49 -0.6
113,287 - HP15_109 0.52 +2.0
113,292 - HP15_109 0.53 -1.4
113,297 - HP15_109 0.53 -1.5
113,320 + HP15_109 0.55 -0.7
113,327 + HP15_109 0.56 +0.7
113,334 - HP15_109 0.56 +0.6
113,336 + HP15_109 0.56 -0.5
113,336 + HP15_109 0.56 -0.1
113,349 - HP15_109 0.57 -0.9
113,368 + HP15_109 0.59 -0.3
113,434 + HP15_109 0.65 +1.0
113,434 + HP15_109 0.65 -0.3
113,434 + HP15_109 0.65 +0.9
113,474 + HP15_109 0.68 -0.4
113,492 + HP15_109 0.69 -0.3
113,539 + HP15_109 0.73 +0.0
113,627 - HP15_109 0.81 -0.8
113,636 + HP15_109 0.82 +1.2
113,705 - HP15_109 0.87 +1.4
113,711 + HP15_109 0.88 -0.3
113,749 - -0.9
113,782 + +0.0
113,803 - +1.8
113,805 + +2.0
113,848 + -0.3
113,848 + -0.6
113,848 + -1.1
113,848 + +0.1
113,856 - -0.5
113,856 - +0.0
113,856 - +0.0
113,856 - -1.5
113,904 + -0.5
114,006 + -0.6
114,009 - -0.5
114,025 + +0.5
114,070 + -0.9
114,179 - HP15_110 0.10 -0.3
114,212 - HP15_110 0.11 -0.0
114,248 + HP15_110 0.12 -0.8
114,274 + HP15_110 0.13 +1.3
114,292 - HP15_110 0.14 +0.8
114,348 + HP15_110 0.15 +1.3
114,348 + HP15_110 0.15 +2.0
114,348 + HP15_110 0.15 -0.2
114,374 + HP15_110 0.16 -0.5
114,374 + HP15_110 0.16 -0.5
114,374 + HP15_110 0.16 -0.3
114,374 + HP15_110 0.16 +0.3
114,374 + HP15_110 0.16 +1.0
114,374 + HP15_110 0.16 -0.6
114,374 + HP15_110 0.16 -0.3
114,374 + HP15_110 0.16 -1.0
114,374 + HP15_110 0.16 +1.4
114,382 - HP15_110 0.17 +0.7
114,382 - HP15_110 0.17 -0.5
114,382 - HP15_110 0.17 +0.8
114,382 - HP15_110 0.17 +0.9
114,382 - HP15_110 0.17 -2.2
114,405 - HP15_110 0.17 +0.6
114,421 + HP15_110 0.18 +1.4
114,437 + HP15_110 0.18 -0.1
114,445 - HP15_110 0.19 +1.2
114,478 - HP15_110 0.20 +1.2
114,554 + HP15_110 0.22 +0.1
114,575 + HP15_110 0.23 +1.1
114,591 + HP15_110 0.23 +0.7
114,629 + HP15_110 0.24 +0.4
114,629 + HP15_110 0.24 -0.3
114,629 + HP15_110 0.24 -0.1
114,637 - HP15_110 0.25 -0.4
114,637 - HP15_110 0.25 +0.8
114,637 - HP15_110 0.25 -0.1
114,637 - HP15_110 0.25 +1.0
114,637 - HP15_110 0.25 +0.1
114,677 + HP15_110 0.26 -1.3
114,682 + HP15_110 0.26 +0.3
114,706 + HP15_110 0.27 +1.0
114,706 + HP15_110 0.27 +0.4
114,711 + HP15_110 0.27 +1.0
114,714 - HP15_110 0.27 -0.2
114,714 - HP15_110 0.27 -0.6
114,716 + HP15_110 0.27 -0.4
114,724 - HP15_110 0.28 -1.8
114,724 - HP15_110 0.28 +0.2
114,805 + HP15_110 0.30 +1.4
114,851 + HP15_110 0.32 +1.3

Or see this region's nucleotide sequence