Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16310

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16305 and ABZR87_RS16310 overlap by 4 nucleotidesABZR87_RS16310 and ABZR87_RS16315 are separated by 123 nucleotidesABZR87_RS16315 and ABZR87_RS16320 are separated by 108 nucleotides ABZR87_RS16305: ABZR87_RS16305 - sigma-54 dependent transcriptional regulator, at 9,354 to 10,712 _RS16305 ABZR87_RS16310: ABZR87_RS16310 - YhfC family glutamic-type intramembrane protease, at 10,709 to 11,509 _RS16310 ABZR87_RS16315: ABZR87_RS16315 - hypothetical protein, at 11,633 to 12,073 _RS16315 ABZR87_RS16320: ABZR87_RS16320 - PAS domain-containing protein, at 12,182 to 14,863 _RS16320 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 10.080 kb on + strand, within ABZR87_RS16305at 10.081 kb on - strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.285 kb on - strand, within ABZR87_RS16305at 10.285 kb on - strand, within ABZR87_RS16305at 10.285 kb on - strand, within ABZR87_RS16305at 10.285 kb on - strand, within ABZR87_RS16305at 10.288 kb on - strand, within ABZR87_RS16305at 10.288 kb on - strand, within ABZR87_RS16305at 10.304 kb on - strand, within ABZR87_RS16305at 10.389 kb on + strand, within ABZR87_RS16305at 10.389 kb on + strand, within ABZR87_RS16305at 10.660 kb on - strandat 10.706 kb on + strandat 10.707 kb on - strandat 10.707 kb on - strandat 10.710 kb on + strandat 10.711 kb on - strandat 10.711 kb on - strandat 10.791 kb on + strand, within ABZR87_RS16310at 10.792 kb on - strand, within ABZR87_RS16310at 10.792 kb on - strand, within ABZR87_RS16310at 10.792 kb on - strand, within ABZR87_RS16310at 10.833 kb on + strand, within ABZR87_RS16310at 10.834 kb on - strand, within ABZR87_RS16310at 11.262 kb on + strand, within ABZR87_RS16310at 11.262 kb on + strand, within ABZR87_RS16310at 11.263 kb on - strand, within ABZR87_RS16310at 11.263 kb on - strand, within ABZR87_RS16310at 11.263 kb on - strand, within ABZR87_RS16310at 11.325 kb on + strand, within ABZR87_RS16310at 11.325 kb on + strand, within ABZR87_RS16310at 11.325 kb on + strand, within ABZR87_RS16310at 11.325 kb on + strand, within ABZR87_RS16310at 11.325 kb on + strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.326 kb on - strand, within ABZR87_RS16310at 11.549 kb on + strandat 11.549 kb on + strandat 11.549 kb on + strandat 11.549 kb on + strandat 11.549 kb on + strandat 11.549 kb on + strandat 11.550 kb on - strandat 11.550 kb on - strandat 11.550 kb on - strandat 11.550 kb on - strandat 11.588 kb on + strandat 11.588 kb on + strandat 11.588 kb on + strandat 11.589 kb on - strandat 11.589 kb on - strandat 11.589 kb on - strandat 11.589 kb on - strandat 11.593 kb on + strandat 11.593 kb on + strandat 11.593 kb on + strandat 11.593 kb on + strandat 11.593 kb on + strandat 11.593 kb on + strandat 11.594 kb on - strandat 11.594 kb on - strandat 11.594 kb on - strandat 11.594 kb on - strandat 11.594 kb on - strandat 11.632 kb on + strandat 11.632 kb on + strandat 11.633 kb on - strandat 11.682 kb on + strand, within ABZR87_RS16315at 11.682 kb on + strand, within ABZR87_RS16315at 11.682 kb on + strand, within ABZR87_RS16315at 11.682 kb on + strand, within ABZR87_RS16315at 11.683 kb on - strand, within ABZR87_RS16315at 11.683 kb on - strand, within ABZR87_RS16315at 11.683 kb on - strand, within ABZR87_RS16315at 11.747 kb on + strand, within ABZR87_RS16315at 11.747 kb on + strand, within ABZR87_RS16315at 11.877 kb on - strand, within ABZR87_RS16315at 11.948 kb on + strand, within ABZR87_RS16315at 11.949 kb on - strand, within ABZR87_RS16315at 11.949 kb on - strand, within ABZR87_RS16315at 11.949 kb on - strand, within ABZR87_RS16315at 11.949 kb on - strand, within ABZR87_RS16315at 11.949 kb on - strand, within ABZR87_RS16315at 12.053 kb on + strandat 12.053 kb on + strandat 12.053 kb on + strandat 12.054 kb on - strandat 12.054 kb on - strandat 12.113 kb on + strandat 12.113 kb on + strandat 12.113 kb on + strandat 12.113 kb on + strandat 12.114 kb on - strandat 12.114 kb on - strandat 12.114 kb on - strandat 12.114 kb on - strandat 12.114 kb on - strandat 12.114 kb on - strandat 12.114 kb on - strandat 12.114 kb on - strandat 12.114 kb on - strandat 12.133 kb on + strandat 12.133 kb on + strandat 12.134 kb on - strandat 12.302 kb on + strandat 12.365 kb on + strandat 12.365 kb on + strandat 12.366 kb on - strandat 12.366 kb on - strandat 12.366 kb on - strandat 12.443 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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10,080 + ABZR87_RS16305 0.53 -1.1
10,081 - ABZR87_RS16305 0.53 -0.9
10,284 + ABZR87_RS16305 0.68 +0.6
10,284 + ABZR87_RS16305 0.68 +1.1
10,284 + ABZR87_RS16305 0.68 +0.5
10,284 + ABZR87_RS16305 0.68 -0.1
10,284 + ABZR87_RS16305 0.68 -1.4
10,284 + ABZR87_RS16305 0.68 -0.7
10,284 + ABZR87_RS16305 0.68 +0.1
10,285 - ABZR87_RS16305 0.69 -0.2
10,285 - ABZR87_RS16305 0.69 +0.2
10,285 - ABZR87_RS16305 0.69 +0.1
10,285 - ABZR87_RS16305 0.69 +0.7
10,288 - ABZR87_RS16305 0.69 +1.1
10,288 - ABZR87_RS16305 0.69 +0.6
10,304 - ABZR87_RS16305 0.70 +0.4
10,389 + ABZR87_RS16305 0.76 -0.1
10,389 + ABZR87_RS16305 0.76 -0.3
10,660 - -0.9
10,706 + -0.4
10,707 - +0.7
10,707 - -1.1
10,710 + +0.1
10,711 - -0.7
10,711 - +1.3
10,791 + ABZR87_RS16310 0.10 -0.6
10,792 - ABZR87_RS16310 0.10 -0.1
10,792 - ABZR87_RS16310 0.10 +0.5
10,792 - ABZR87_RS16310 0.10 -0.3
10,833 + ABZR87_RS16310 0.15 -0.5
10,834 - ABZR87_RS16310 0.16 +0.8
11,262 + ABZR87_RS16310 0.69 -0.1
11,262 + ABZR87_RS16310 0.69 -0.1
11,263 - ABZR87_RS16310 0.69 -0.7
11,263 - ABZR87_RS16310 0.69 -0.9
11,263 - ABZR87_RS16310 0.69 +0.2
11,325 + ABZR87_RS16310 0.77 -1.9
11,325 + ABZR87_RS16310 0.77 -2.6
11,325 + ABZR87_RS16310 0.77 -1.5
11,325 + ABZR87_RS16310 0.77 +0.2
11,325 + ABZR87_RS16310 0.77 +0.5
11,326 - ABZR87_RS16310 0.77 +0.2
11,326 - ABZR87_RS16310 0.77 +0.6
11,326 - ABZR87_RS16310 0.77 -0.0
11,326 - ABZR87_RS16310 0.77 -0.9
11,326 - ABZR87_RS16310 0.77 +0.1
11,326 - ABZR87_RS16310 0.77 -0.2
11,326 - ABZR87_RS16310 0.77 +0.1
11,326 - ABZR87_RS16310 0.77 +0.3
11,326 - ABZR87_RS16310 0.77 +0.3
11,326 - ABZR87_RS16310 0.77 -0.3
11,549 + -0.4
11,549 + -0.0
11,549 + -0.1
11,549 + -0.2
11,549 + -1.4
11,549 + -0.3
11,550 - +0.4
11,550 - +1.0
11,550 - +0.6
11,550 - -1.2
11,588 + +0.2
11,588 + -0.1
11,588 + +1.5
11,589 - -0.5
11,589 - -0.2
11,589 - +0.2
11,589 - +0.3
11,593 + -2.4
11,593 + +0.4
11,593 + +0.1
11,593 + -0.9
11,593 + +0.1
11,593 + -0.8
11,594 - -0.5
11,594 - +0.8
11,594 - -0.7
11,594 - -0.4
11,594 - +0.7
11,632 + -0.5
11,632 + -1.0
11,633 - +0.1
11,682 + ABZR87_RS16315 0.11 +1.4
11,682 + ABZR87_RS16315 0.11 +1.1
11,682 + ABZR87_RS16315 0.11 +0.4
11,682 + ABZR87_RS16315 0.11 +0.7
11,683 - ABZR87_RS16315 0.11 -0.4
11,683 - ABZR87_RS16315 0.11 -0.5
11,683 - ABZR87_RS16315 0.11 -0.3
11,747 + ABZR87_RS16315 0.26 -1.1
11,747 + ABZR87_RS16315 0.26 -0.8
11,877 - ABZR87_RS16315 0.55 -0.2
11,948 + ABZR87_RS16315 0.71 +0.1
11,949 - ABZR87_RS16315 0.72 -0.1
11,949 - ABZR87_RS16315 0.72 -2.0
11,949 - ABZR87_RS16315 0.72 -0.0
11,949 - ABZR87_RS16315 0.72 +0.1
11,949 - ABZR87_RS16315 0.72 +0.1
12,053 + +1.2
12,053 + -0.5
12,053 + +1.3
12,054 - +0.1
12,054 - -0.1
12,113 + -0.1
12,113 + -1.9
12,113 + +1.5
12,113 + -0.2
12,114 - -0.3
12,114 - -0.3
12,114 - +0.3
12,114 - -0.2
12,114 - -0.8
12,114 - -0.8
12,114 - +0.9
12,114 - +0.1
12,114 - +1.5
12,133 + -0.3
12,133 + -0.2
12,134 - +1.8
12,302 + -0.4
12,365 + -2.1
12,365 + -0.4
12,366 - +0.3
12,366 - -0.2
12,366 - -0.1
12,443 + -0.8

Or see this region's nucleotide sequence