Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15310 and ABZR87_RS15315 are separated by 138 nucleotides ABZR87_RS15315 and ABZR87_RS15320 are separated by 3 nucleotides ABZR87_RS15320 and ABZR87_RS15325 are separated by 55 nucleotides
ABZR87_RS15310: ABZR87_RS15310 - TRAP transporter substrate-binding protein, at 3,222,566 to 3,223,591
_RS15310
ABZR87_RS15315: ABZR87_RS15315 - DUF979 domain-containing protein, at 3,223,730 to 3,224,686
_RS15315
ABZR87_RS15320: ABZR87_RS15320 - DUF969 domain-containing protein, at 3,224,690 to 3,225,427
_RS15320
ABZR87_RS15325: ABZR87_RS15325 - 5-oxoprolinase subunit PxpA, at 3,225,483 to 3,226,226
_RS15325
Position (kb)
3223
3224
3225 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3222.748 kb on - strand, within ABZR87_RS15310 at 3222.748 kb on - strand, within ABZR87_RS15310 at 3222.748 kb on - strand, within ABZR87_RS15310 at 3222.784 kb on - strand, within ABZR87_RS15310 at 3222.891 kb on + strand, within ABZR87_RS15310 at 3222.891 kb on + strand, within ABZR87_RS15310 at 3222.892 kb on - strand, within ABZR87_RS15310 at 3222.892 kb on - strand, within ABZR87_RS15310 at 3222.894 kb on + strand, within ABZR87_RS15310 at 3222.894 kb on + strand, within ABZR87_RS15310 at 3222.894 kb on + strand, within ABZR87_RS15310 at 3222.895 kb on - strand, within ABZR87_RS15310 at 3222.895 kb on - strand, within ABZR87_RS15310 at 3222.895 kb on - strand, within ABZR87_RS15310 at 3222.895 kb on - strand, within ABZR87_RS15310 at 3222.895 kb on - strand, within ABZR87_RS15310 at 3222.895 kb on - strand, within ABZR87_RS15310 at 3222.895 kb on - strand, within ABZR87_RS15310 at 3222.897 kb on + strand, within ABZR87_RS15310 at 3222.897 kb on + strand, within ABZR87_RS15310 at 3222.898 kb on - strand, within ABZR87_RS15310 at 3222.898 kb on - strand, within ABZR87_RS15310 at 3222.898 kb on - strand, within ABZR87_RS15310 at 3222.898 kb on - strand, within ABZR87_RS15310 at 3223.023 kb on + strand, within ABZR87_RS15310 at 3223.023 kb on + strand, within ABZR87_RS15310 at 3223.024 kb on - strand, within ABZR87_RS15310 at 3223.024 kb on - strand, within ABZR87_RS15310 at 3223.024 kb on - strand, within ABZR87_RS15310 at 3223.024 kb on - strand, within ABZR87_RS15310 at 3223.055 kb on - strand, within ABZR87_RS15310 at 3223.056 kb on + strand, within ABZR87_RS15310 at 3223.056 kb on + strand, within ABZR87_RS15310 at 3223.057 kb on - strand, within ABZR87_RS15310 at 3223.057 kb on - strand, within ABZR87_RS15310 at 3223.057 kb on - strand, within ABZR87_RS15310 at 3223.114 kb on - strand, within ABZR87_RS15310 at 3223.144 kb on - strand, within ABZR87_RS15310 at 3223.144 kb on - strand, within ABZR87_RS15310 at 3223.224 kb on + strand, within ABZR87_RS15310 at 3223.224 kb on + strand, within ABZR87_RS15310 at 3223.224 kb on + strand, within ABZR87_RS15310 at 3223.225 kb on - strand, within ABZR87_RS15310 at 3223.232 kb on + strand, within ABZR87_RS15310 at 3223.232 kb on + strand, within ABZR87_RS15310 at 3223.233 kb on - strand, within ABZR87_RS15310 at 3223.462 kb on - strand, within ABZR87_RS15310 at 3223.721 kb on + strand at 3223.721 kb on + strand at 3223.749 kb on + strand at 3223.749 kb on + strand at 3223.749 kb on + strand at 3223.750 kb on - strand at 3223.750 kb on - strand at 3223.781 kb on + strand at 3223.781 kb on + strand at 3223.782 kb on - strand at 3223.820 kb on - strand at 3223.853 kb on - strand, within ABZR87_RS15315 at 3223.894 kb on - strand, within ABZR87_RS15315 at 3224.043 kb on + strand, within ABZR87_RS15315 at 3224.043 kb on + strand, within ABZR87_RS15315 at 3224.043 kb on + strand, within ABZR87_RS15315 at 3224.043 kb on + strand, within ABZR87_RS15315 at 3224.044 kb on - strand, within ABZR87_RS15315 at 3224.044 kb on - strand, within ABZR87_RS15315 at 3224.068 kb on - strand, within ABZR87_RS15315 at 3224.068 kb on - strand, within ABZR87_RS15315 at 3224.068 kb on - strand, within ABZR87_RS15315 at 3224.082 kb on + strand, within ABZR87_RS15315 at 3224.083 kb on - strand, within ABZR87_RS15315 at 3224.083 kb on - strand, within ABZR87_RS15315 at 3224.662 kb on - strand at 3224.662 kb on - strand at 3224.667 kb on + strand at 3224.667 kb on + strand at 3224.667 kb on + strand at 3224.667 kb on + strand at 3224.667 kb on + strand at 3224.668 kb on - strand at 3224.668 kb on - strand at 3224.668 kb on - strand at 3224.668 kb on - strand at 3224.691 kb on + strand at 3224.691 kb on + strand at 3224.691 kb on + strand at 3224.719 kb on + strand at 3224.720 kb on - strand at 3224.831 kb on + strand, within ABZR87_RS15320 at 3224.839 kb on + strand, within ABZR87_RS15320 at 3224.840 kb on - strand, within ABZR87_RS15320 at 3225.407 kb on + strand at 3225.407 kb on + strand at 3225.408 kb on - strand at 3225.408 kb on - strand at 3225.421 kb on + strand at 3225.421 kb on + strand at 3225.447 kb on + strand at 3225.448 kb on - strand at 3225.450 kb on + strand at 3225.450 kb on + strand at 3225.451 kb on - strand at 3225.451 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,222,748 - ABZR87_RS15310 0.18 +0.3 3,222,748 - ABZR87_RS15310 0.18 -0.3 3,222,748 - ABZR87_RS15310 0.18 -0.5 3,222,784 - ABZR87_RS15310 0.21 +0.3 3,222,891 + ABZR87_RS15310 0.32 -0.8 3,222,891 + ABZR87_RS15310 0.32 -0.2 3,222,892 - ABZR87_RS15310 0.32 -0.0 3,222,892 - ABZR87_RS15310 0.32 +0.0 3,222,894 + ABZR87_RS15310 0.32 +0.9 3,222,894 + ABZR87_RS15310 0.32 -0.0 3,222,894 + ABZR87_RS15310 0.32 +1.0 3,222,895 - ABZR87_RS15310 0.32 +0.2 3,222,895 - ABZR87_RS15310 0.32 +0.3 3,222,895 - ABZR87_RS15310 0.32 -0.4 3,222,895 - ABZR87_RS15310 0.32 -0.1 3,222,895 - ABZR87_RS15310 0.32 -0.1 3,222,895 - ABZR87_RS15310 0.32 +1.3 3,222,895 - ABZR87_RS15310 0.32 +0.3 3,222,897 + ABZR87_RS15310 0.32 +0.8 3,222,897 + ABZR87_RS15310 0.32 -0.1 3,222,898 - ABZR87_RS15310 0.32 +1.2 3,222,898 - ABZR87_RS15310 0.32 -0.1 3,222,898 - ABZR87_RS15310 0.32 +0.3 3,222,898 - ABZR87_RS15310 0.32 +0.1 3,223,023 + ABZR87_RS15310 0.45 +0.3 3,223,023 + ABZR87_RS15310 0.45 +0.1 3,223,024 - ABZR87_RS15310 0.45 -0.2 3,223,024 - ABZR87_RS15310 0.45 +0.7 3,223,024 - ABZR87_RS15310 0.45 -0.7 3,223,024 - ABZR87_RS15310 0.45 +0.9 3,223,055 - ABZR87_RS15310 0.48 +0.6 3,223,056 + ABZR87_RS15310 0.48 -2.3 3,223,056 + ABZR87_RS15310 0.48 +0.3 3,223,057 - ABZR87_RS15310 0.48 +0.4 3,223,057 - ABZR87_RS15310 0.48 +0.3 3,223,057 - ABZR87_RS15310 0.48 +0.1 3,223,114 - ABZR87_RS15310 0.53 -0.9 3,223,144 - ABZR87_RS15310 0.56 +0.6 3,223,144 - ABZR87_RS15310 0.56 +0.1 3,223,224 + ABZR87_RS15310 0.64 +1.2 3,223,224 + ABZR87_RS15310 0.64 +0.5 3,223,224 + ABZR87_RS15310 0.64 +0.7 3,223,225 - ABZR87_RS15310 0.64 -0.2 3,223,232 + ABZR87_RS15310 0.65 -0.5 3,223,232 + ABZR87_RS15310 0.65 +0.5 3,223,233 - ABZR87_RS15310 0.65 -0.7 3,223,462 - ABZR87_RS15310 0.87 -0.4 3,223,721 + +0.5 3,223,721 + +2.0 3,223,749 + +2.7 3,223,749 + +1.2 3,223,749 + +1.3 3,223,750 - +1.7 3,223,750 - +2.8 3,223,781 + +1.3 3,223,781 + +1.6 3,223,782 - +1.7 3,223,820 - +2.4 3,223,853 - ABZR87_RS15315 0.13 +1.2 3,223,894 - ABZR87_RS15315 0.17 +2.5 3,224,043 + ABZR87_RS15315 0.33 +1.9 3,224,043 + ABZR87_RS15315 0.33 +1.1 3,224,043 + ABZR87_RS15315 0.33 +1.5 3,224,043 + ABZR87_RS15315 0.33 +2.0 3,224,044 - ABZR87_RS15315 0.33 +0.8 3,224,044 - ABZR87_RS15315 0.33 +1.9 3,224,068 - ABZR87_RS15315 0.35 +1.9 3,224,068 - ABZR87_RS15315 0.35 +1.3 3,224,068 - ABZR87_RS15315 0.35 +2.0 3,224,082 + ABZR87_RS15315 0.37 +1.4 3,224,083 - ABZR87_RS15315 0.37 +1.9 3,224,083 - ABZR87_RS15315 0.37 +1.8 3,224,662 - +1.9 3,224,662 - +1.3 3,224,667 + +1.6 3,224,667 + +1.5 3,224,667 + +0.6 3,224,667 + +0.9 3,224,667 + +1.7 3,224,668 - +0.6 3,224,668 - +2.7 3,224,668 - -0.1 3,224,668 - +1.2 3,224,691 + +1.7 3,224,691 + +1.7 3,224,691 + +2.3 3,224,719 + +1.8 3,224,720 - +1.3 3,224,831 + ABZR87_RS15320 0.19 +1.8 3,224,839 + ABZR87_RS15320 0.20 +1.8 3,224,840 - ABZR87_RS15320 0.20 +1.5 3,225,407 + +1.8 3,225,407 + +1.9 3,225,408 - +1.4 3,225,408 - +1.8 3,225,421 + +2.0 3,225,421 + +0.0 3,225,447 + +1.1 3,225,448 - -0.1 3,225,450 + +1.3 3,225,450 + +1.3 3,225,451 - +1.1 3,225,451 - -0.2
Or see this region's nucleotide sequence