Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS13980 and ABZR87_RS13985 are separated by 91 nucleotides ABZR87_RS13985 and ABZR87_RS13990 are separated by 450 nucleotides ABZR87_RS13990 and ABZR87_RS13995 are separated by 21 nucleotides
ABZR87_RS13980: ABZR87_RS13980 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,952,096 to 2,953,112
_RS13980
ABZR87_RS13985: ABZR87_RS13985 - alpha-ketoglutarate dehydrogenase, at 2,953,204 to 2,955,903
_RS13985
ABZR87_RS13990: ABZR87_RS13990 - hypothetical protein, at 2,956,354 to 2,956,773
_RS13990
ABZR87_RS13995: ABZR87_RS13995 - aldo/keto reductase, at 2,956,795 to 2,957,628
_RS13995
Position (kb)
2953
2954
2955
2956 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.265 kb on - strand, within ABZR87_RS13980 at 2952.295 kb on - strand, within ABZR87_RS13980 at 2952.295 kb on - strand, within ABZR87_RS13980 at 2952.408 kb on + strand, within ABZR87_RS13980 at 2952.409 kb on - strand, within ABZR87_RS13980 at 2952.424 kb on - strand, within ABZR87_RS13980 at 2952.441 kb on - strand, within ABZR87_RS13980 at 2952.669 kb on + strand, within ABZR87_RS13980 at 2952.669 kb on + strand, within ABZR87_RS13980 at 2952.669 kb on + strand, within ABZR87_RS13980 at 2952.670 kb on - strand, within ABZR87_RS13980 at 2952.670 kb on - strand, within ABZR87_RS13980 at 2952.898 kb on - strand, within ABZR87_RS13980 at 2952.976 kb on - strand, within ABZR87_RS13980 at 2953.050 kb on + strand at 2953.051 kb on - strand at 2953.051 kb on - strand at 2953.051 kb on - strand at 2953.087 kb on - strand at 2953.214 kb on + strand at 2953.214 kb on + strand at 2953.215 kb on - strand at 2953.408 kb on - strand at 2953.451 kb on - strand at 2953.537 kb on + strand, within ABZR87_RS13985 at 2953.567 kb on + strand, within ABZR87_RS13985 at 2953.568 kb on - strand, within ABZR87_RS13985 at 2953.568 kb on - strand, within ABZR87_RS13985 at 2953.681 kb on + strand, within ABZR87_RS13985 at 2953.681 kb on + strand, within ABZR87_RS13985 at 2953.682 kb on - strand, within ABZR87_RS13985 at 2953.682 kb on - strand, within ABZR87_RS13985 at 2953.732 kb on + strand, within ABZR87_RS13985 at 2953.846 kb on + strand, within ABZR87_RS13985 at 2953.846 kb on + strand, within ABZR87_RS13985 at 2953.846 kb on + strand, within ABZR87_RS13985 at 2953.846 kb on + strand, within ABZR87_RS13985 at 2953.846 kb on + strand, within ABZR87_RS13985 at 2953.847 kb on - strand, within ABZR87_RS13985 at 2953.847 kb on - strand, within ABZR87_RS13985 at 2953.847 kb on - strand, within ABZR87_RS13985 at 2953.867 kb on + strand, within ABZR87_RS13985 at 2953.867 kb on + strand, within ABZR87_RS13985 at 2953.868 kb on - strand, within ABZR87_RS13985 at 2953.868 kb on - strand, within ABZR87_RS13985 at 2954.234 kb on - strand, within ABZR87_RS13985 at 2954.554 kb on + strand, within ABZR87_RS13985 at 2954.555 kb on - strand, within ABZR87_RS13985 at 2954.587 kb on + strand, within ABZR87_RS13985 at 2954.587 kb on + strand, within ABZR87_RS13985 at 2954.587 kb on + strand, within ABZR87_RS13985 at 2954.588 kb on - strand, within ABZR87_RS13985 at 2954.588 kb on - strand, within ABZR87_RS13985 at 2954.854 kb on + strand, within ABZR87_RS13985 at 2954.854 kb on + strand, within ABZR87_RS13985 at 2954.854 kb on + strand, within ABZR87_RS13985 at 2954.854 kb on + strand, within ABZR87_RS13985 at 2954.854 kb on + strand, within ABZR87_RS13985 at 2954.875 kb on + strand, within ABZR87_RS13985 at 2954.875 kb on + strand, within ABZR87_RS13985 at 2954.876 kb on - strand, within ABZR87_RS13985 at 2954.905 kb on + strand, within ABZR87_RS13985 at 2954.905 kb on + strand, within ABZR87_RS13985 at 2954.906 kb on - strand, within ABZR87_RS13985 at 2954.934 kb on - strand, within ABZR87_RS13985 at 2954.995 kb on + strand, within ABZR87_RS13985 at 2954.995 kb on + strand, within ABZR87_RS13985 at 2955.028 kb on + strand, within ABZR87_RS13985 at 2955.028 kb on + strand, within ABZR87_RS13985 at 2955.029 kb on - strand, within ABZR87_RS13985 at 2955.029 kb on - strand, within ABZR87_RS13985 at 2955.029 kb on - strand, within ABZR87_RS13985 at 2955.029 kb on - strand, within ABZR87_RS13985 at 2955.029 kb on - strand, within ABZR87_RS13985 at 2955.034 kb on + strand, within ABZR87_RS13985 at 2955.034 kb on + strand, within ABZR87_RS13985 at 2955.034 kb on + strand, within ABZR87_RS13985 at 2955.034 kb on + strand, within ABZR87_RS13985 at 2955.034 kb on + strand, within ABZR87_RS13985 at 2955.035 kb on - strand, within ABZR87_RS13985 at 2955.035 kb on - strand, within ABZR87_RS13985 at 2955.038 kb on - strand, within ABZR87_RS13985 at 2955.038 kb on - strand, within ABZR87_RS13985 at 2955.038 kb on - strand, within ABZR87_RS13985 at 2955.233 kb on - strand, within ABZR87_RS13985 at 2955.298 kb on + strand, within ABZR87_RS13985 at 2955.299 kb on - strand, within ABZR87_RS13985 at 2955.299 kb on - strand, within ABZR87_RS13985 at 2955.299 kb on - strand, within ABZR87_RS13985 at 2955.299 kb on - strand, within ABZR87_RS13985 at 2955.299 kb on - strand, within ABZR87_RS13985 at 2955.301 kb on + strand, within ABZR87_RS13985 at 2955.302 kb on - strand, within ABZR87_RS13985 at 2955.302 kb on - strand, within ABZR87_RS13985 at 2955.302 kb on - strand, within ABZR87_RS13985 at 2955.325 kb on + strand, within ABZR87_RS13985 at 2955.325 kb on + strand, within ABZR87_RS13985 at 2955.326 kb on - strand, within ABZR87_RS13985 at 2955.382 kb on + strand, within ABZR87_RS13985 at 2955.383 kb on - strand, within ABZR87_RS13985 at 2955.383 kb on - strand, within ABZR87_RS13985 at 2955.595 kb on + strand, within ABZR87_RS13985 at 2955.595 kb on + strand, within ABZR87_RS13985 at 2955.595 kb on + strand, within ABZR87_RS13985 at 2955.649 kb on + strand at 2955.649 kb on + strand at 2955.649 kb on + strand at 2955.650 kb on - strand at 2955.650 kb on - strand at 2955.698 kb on - strand at 2955.987 kb on + strand at 2955.987 kb on + strand at 2955.988 kb on - strand at 2956.136 kb on + strand at 2956.136 kb on + strand at 2956.136 kb on + strand at 2956.136 kb on + strand at 2956.137 kb on - strand at 2956.201 kb on + strand at 2956.289 kb on - strand at 2956.341 kb on + strand at 2956.341 kb on + strand at 2956.341 kb on + strand at 2956.342 kb on - strand at 2956.342 kb on - strand at 2956.478 kb on + strand, within ABZR87_RS13990 at 2956.479 kb on - strand, within ABZR87_RS13990 at 2956.479 kb on - strand, within ABZR87_RS13990 at 2956.479 kb on - strand, within ABZR87_RS13990 at 2956.510 kb on + strand, within ABZR87_RS13990 at 2956.510 kb on + strand, within ABZR87_RS13990 at 2956.510 kb on + strand, within ABZR87_RS13990 at 2956.511 kb on - strand, within ABZR87_RS13990 at 2956.511 kb on - strand, within ABZR87_RS13990 at 2956.511 kb on - strand, within ABZR87_RS13990 at 2956.511 kb on - strand, within ABZR87_RS13990 at 2956.754 kb on - strand at 2956.779 kb on + strand at 2956.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,952,264 + ABZR87_RS13980 0.17 -0.9 2,952,264 + ABZR87_RS13980 0.17 +0.3 2,952,264 + ABZR87_RS13980 0.17 -0.1 2,952,264 + ABZR87_RS13980 0.17 -0.3 2,952,264 + ABZR87_RS13980 0.17 +0.5 2,952,264 + ABZR87_RS13980 0.17 +0.4 2,952,264 + ABZR87_RS13980 0.17 +0.4 2,952,265 - ABZR87_RS13980 0.17 -0.1 2,952,295 - ABZR87_RS13980 0.20 +0.8 2,952,295 - ABZR87_RS13980 0.20 +0.1 2,952,408 + ABZR87_RS13980 0.31 -0.4 2,952,409 - ABZR87_RS13980 0.31 -0.1 2,952,424 - ABZR87_RS13980 0.32 +0.0 2,952,441 - ABZR87_RS13980 0.34 -0.1 2,952,669 + ABZR87_RS13980 0.56 -0.4 2,952,669 + ABZR87_RS13980 0.56 -1.0 2,952,669 + ABZR87_RS13980 0.56 +0.3 2,952,670 - ABZR87_RS13980 0.56 -1.0 2,952,670 - ABZR87_RS13980 0.56 -0.1 2,952,898 - ABZR87_RS13980 0.79 +0.3 2,952,976 - ABZR87_RS13980 0.87 +0.1 2,953,050 + +0.1 2,953,051 - -0.4 2,953,051 - +0.6 2,953,051 - +1.8 2,953,087 - -0.0 2,953,214 + -0.0 2,953,214 + +0.1 2,953,215 - +0.1 2,953,408 - +0.8 2,953,451 - +0.2 2,953,537 + ABZR87_RS13985 0.12 +1.2 2,953,567 + ABZR87_RS13985 0.13 +0.6 2,953,568 - ABZR87_RS13985 0.13 +2.0 2,953,568 - ABZR87_RS13985 0.13 -1.4 2,953,681 + ABZR87_RS13985 0.18 +1.1 2,953,681 + ABZR87_RS13985 0.18 -0.2 2,953,682 - ABZR87_RS13985 0.18 +0.5 2,953,682 - ABZR87_RS13985 0.18 +0.4 2,953,732 + ABZR87_RS13985 0.20 -0.4 2,953,846 + ABZR87_RS13985 0.24 +0.0 2,953,846 + ABZR87_RS13985 0.24 +1.2 2,953,846 + ABZR87_RS13985 0.24 -1.2 2,953,846 + ABZR87_RS13985 0.24 -0.8 2,953,846 + ABZR87_RS13985 0.24 +0.3 2,953,847 - ABZR87_RS13985 0.24 -0.6 2,953,847 - ABZR87_RS13985 0.24 +0.5 2,953,847 - ABZR87_RS13985 0.24 +3.4 2,953,867 + ABZR87_RS13985 0.25 +0.5 2,953,867 + ABZR87_RS13985 0.25 -0.3 2,953,868 - ABZR87_RS13985 0.25 -0.4 2,953,868 - ABZR87_RS13985 0.25 -0.6 2,954,234 - ABZR87_RS13985 0.38 -0.1 2,954,554 + ABZR87_RS13985 0.50 +0.9 2,954,555 - ABZR87_RS13985 0.50 -0.1 2,954,587 + ABZR87_RS13985 0.51 -0.1 2,954,587 + ABZR87_RS13985 0.51 -0.0 2,954,587 + ABZR87_RS13985 0.51 +0.4 2,954,588 - ABZR87_RS13985 0.51 +0.4 2,954,588 - ABZR87_RS13985 0.51 +0.6 2,954,854 + ABZR87_RS13985 0.61 -2.2 2,954,854 + ABZR87_RS13985 0.61 +0.2 2,954,854 + ABZR87_RS13985 0.61 -1.1 2,954,854 + ABZR87_RS13985 0.61 -0.1 2,954,854 + ABZR87_RS13985 0.61 -0.4 2,954,875 + ABZR87_RS13985 0.62 +0.1 2,954,875 + ABZR87_RS13985 0.62 +2.4 2,954,876 - ABZR87_RS13985 0.62 -0.1 2,954,905 + ABZR87_RS13985 0.63 -0.0 2,954,905 + ABZR87_RS13985 0.63 -0.3 2,954,906 - ABZR87_RS13985 0.63 +0.3 2,954,934 - ABZR87_RS13985 0.64 -0.4 2,954,995 + ABZR87_RS13985 0.66 -1.2 2,954,995 + ABZR87_RS13985 0.66 -3.0 2,955,028 + ABZR87_RS13985 0.68 +1.5 2,955,028 + ABZR87_RS13985 0.68 +0.7 2,955,029 - ABZR87_RS13985 0.68 -0.8 2,955,029 - ABZR87_RS13985 0.68 -1.7 2,955,029 - ABZR87_RS13985 0.68 +0.1 2,955,029 - ABZR87_RS13985 0.68 +0.3 2,955,029 - ABZR87_RS13985 0.68 -0.2 2,955,034 + ABZR87_RS13985 0.68 +0.9 2,955,034 + ABZR87_RS13985 0.68 +0.3 2,955,034 + ABZR87_RS13985 0.68 +0.1 2,955,034 + ABZR87_RS13985 0.68 +0.4 2,955,034 + ABZR87_RS13985 0.68 -2.0 2,955,035 - ABZR87_RS13985 0.68 +0.1 2,955,035 - ABZR87_RS13985 0.68 +0.2 2,955,038 - ABZR87_RS13985 0.68 -0.2 2,955,038 - ABZR87_RS13985 0.68 -0.8 2,955,038 - ABZR87_RS13985 0.68 +1.0 2,955,233 - ABZR87_RS13985 0.75 +0.2 2,955,298 + ABZR87_RS13985 0.78 +0.2 2,955,299 - ABZR87_RS13985 0.78 -0.6 2,955,299 - ABZR87_RS13985 0.78 +0.2 2,955,299 - ABZR87_RS13985 0.78 +0.4 2,955,299 - ABZR87_RS13985 0.78 +1.2 2,955,299 - ABZR87_RS13985 0.78 -0.2 2,955,301 + ABZR87_RS13985 0.78 -1.2 2,955,302 - ABZR87_RS13985 0.78 +0.2 2,955,302 - ABZR87_RS13985 0.78 -0.7 2,955,302 - ABZR87_RS13985 0.78 -0.3 2,955,325 + ABZR87_RS13985 0.79 -0.6 2,955,325 + ABZR87_RS13985 0.79 +0.3 2,955,326 - ABZR87_RS13985 0.79 -0.7 2,955,382 + ABZR87_RS13985 0.81 -0.8 2,955,383 - ABZR87_RS13985 0.81 +0.6 2,955,383 - ABZR87_RS13985 0.81 +0.2 2,955,595 + ABZR87_RS13985 0.89 +0.6 2,955,595 + ABZR87_RS13985 0.89 +0.7 2,955,595 + ABZR87_RS13985 0.89 +0.9 2,955,649 + -2.7 2,955,649 + +0.5 2,955,649 + +0.5 2,955,650 - +1.4 2,955,650 - -0.1 2,955,698 - +0.2 2,955,987 + +0.6 2,955,987 + +0.6 2,955,988 - +2.3 2,956,136 + -0.8 2,956,136 + -0.7 2,956,136 + -0.3 2,956,136 + -0.6 2,956,137 - -0.5 2,956,201 + -0.7 2,956,289 - +0.2 2,956,341 + +0.2 2,956,341 + -0.3 2,956,341 + +0.1 2,956,342 - +0.3 2,956,342 - -0.5 2,956,478 + ABZR87_RS13990 0.30 -0.8 2,956,479 - ABZR87_RS13990 0.30 -0.2 2,956,479 - ABZR87_RS13990 0.30 -1.8 2,956,479 - ABZR87_RS13990 0.30 +0.5 2,956,510 + ABZR87_RS13990 0.37 +0.8 2,956,510 + ABZR87_RS13990 0.37 -1.5 2,956,510 + ABZR87_RS13990 0.37 -1.8 2,956,511 - ABZR87_RS13990 0.37 -0.8 2,956,511 - ABZR87_RS13990 0.37 -1.0 2,956,511 - ABZR87_RS13990 0.37 -0.0 2,956,511 - ABZR87_RS13990 0.37 -0.2 2,956,754 - +0.2 2,956,779 + -0.1 2,956,789 - +1.2
Or see this region's nucleotide sequence