Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS13970 and ABZR87_RS13975 are separated by 17 nucleotides ABZR87_RS13975 and ABZR87_RS13980 are separated by 145 nucleotides
ABZR87_RS13970: ABZR87_RS13970 - aminotransferase class V-fold PLP-dependent enzyme, at 2,949,933 to 2,951,411
_RS13970
ABZR87_RS13975: ABZR87_RS13975 - Lrp/AsnC family transcriptional regulator, at 2,951,429 to 2,951,950
_RS13975
ABZR87_RS13980: ABZR87_RS13980 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,952,096 to 2,953,112
_RS13980
Position (kb)
2951
2952 Strain fitness (log2 ratio)
-1
0
1 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.588 kb on - strand, within ABZR87_RS13970 at 2950.588 kb on - strand, within ABZR87_RS13970 at 2950.588 kb on - strand, within ABZR87_RS13970 at 2951.257 kb on - strand, within ABZR87_RS13970 at 2951.508 kb on + strand, within ABZR87_RS13975 at 2951.509 kb on - strand, within ABZR87_RS13975 at 2951.509 kb on - strand, within ABZR87_RS13975 at 2951.509 kb on - strand, within ABZR87_RS13975 at 2951.538 kb on + strand, within ABZR87_RS13975 at 2951.538 kb on + strand, within ABZR87_RS13975 at 2951.538 kb on + strand, within ABZR87_RS13975 at 2951.539 kb on - strand, within ABZR87_RS13975 at 2951.539 kb on - strand, within ABZR87_RS13975 at 2952.046 kb on - strand at 2952.120 kb on + strand at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.265 kb on - strand, within ABZR87_RS13980 at 2952.295 kb on - strand, within ABZR87_RS13980 at 2952.295 kb on - strand, within ABZR87_RS13980 at 2952.408 kb on + strand, within ABZR87_RS13980 at 2952.409 kb on - strand, within ABZR87_RS13980 at 2952.424 kb on - strand, within ABZR87_RS13980 at 2952.441 kb on - strand, within ABZR87_RS13980 at 2952.669 kb on + strand, within ABZR87_RS13980 at 2952.669 kb on + strand, within ABZR87_RS13980 at 2952.669 kb on + strand, within ABZR87_RS13980 at 2952.670 kb on - strand, within ABZR87_RS13980 at 2952.670 kb on - strand, within ABZR87_RS13980 at 2952.898 kb on - strand, within ABZR87_RS13980
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,950,560 + ABZR87_RS13970 0.42 -1.2 2,950,560 + ABZR87_RS13970 0.42 -0.2 2,950,560 + ABZR87_RS13970 0.42 -0.1 2,950,560 + ABZR87_RS13970 0.42 +0.5 2,950,560 + ABZR87_RS13970 0.42 -0.2 2,950,560 + ABZR87_RS13970 0.42 +1.4 2,950,561 - ABZR87_RS13970 0.42 -0.1 2,950,561 - ABZR87_RS13970 0.42 +0.4 2,950,561 - ABZR87_RS13970 0.42 +0.8 2,950,561 - ABZR87_RS13970 0.42 +0.7 2,950,561 - ABZR87_RS13970 0.42 -0.6 2,950,587 + ABZR87_RS13970 0.44 +0.5 2,950,587 + ABZR87_RS13970 0.44 +0.2 2,950,587 + ABZR87_RS13970 0.44 +1.2 2,950,587 + ABZR87_RS13970 0.44 +0.3 2,950,587 + ABZR87_RS13970 0.44 +0.0 2,950,588 - ABZR87_RS13970 0.44 -0.4 2,950,588 - ABZR87_RS13970 0.44 -0.2 2,950,588 - ABZR87_RS13970 0.44 +0.4 2,951,257 - ABZR87_RS13970 0.90 +0.9 2,951,508 + ABZR87_RS13975 0.15 +0.8 2,951,509 - ABZR87_RS13975 0.15 +1.4 2,951,509 - ABZR87_RS13975 0.15 +1.0 2,951,509 - ABZR87_RS13975 0.15 +0.6 2,951,538 + ABZR87_RS13975 0.21 +1.5 2,951,538 + ABZR87_RS13975 0.21 +0.3 2,951,538 + ABZR87_RS13975 0.21 -0.6 2,951,539 - ABZR87_RS13975 0.21 +0.4 2,951,539 - ABZR87_RS13975 0.21 +1.7 2,952,046 - -0.0 2,952,120 + +0.2 2,952,264 + ABZR87_RS13980 0.17 -0.9 2,952,264 + ABZR87_RS13980 0.17 +0.3 2,952,264 + ABZR87_RS13980 0.17 -0.1 2,952,264 + ABZR87_RS13980 0.17 -0.3 2,952,264 + ABZR87_RS13980 0.17 +0.5 2,952,264 + ABZR87_RS13980 0.17 +0.4 2,952,264 + ABZR87_RS13980 0.17 +0.4 2,952,265 - ABZR87_RS13980 0.17 -0.1 2,952,295 - ABZR87_RS13980 0.20 +0.8 2,952,295 - ABZR87_RS13980 0.20 +0.1 2,952,408 + ABZR87_RS13980 0.31 -0.4 2,952,409 - ABZR87_RS13980 0.31 -0.1 2,952,424 - ABZR87_RS13980 0.32 +0.0 2,952,441 - ABZR87_RS13980 0.34 -0.1 2,952,669 + ABZR87_RS13980 0.56 -0.4 2,952,669 + ABZR87_RS13980 0.56 -1.0 2,952,669 + ABZR87_RS13980 0.56 +0.3 2,952,670 - ABZR87_RS13980 0.56 -1.0 2,952,670 - ABZR87_RS13980 0.56 -0.1 2,952,898 - ABZR87_RS13980 0.79 +0.3
Or see this region's nucleotide sequence