Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10570

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10565 and ABZR87_RS10570 are separated by 11 nucleotidesABZR87_RS10570 and ABZR87_RS10575 are separated by 47 nucleotides ABZR87_RS10565: ABZR87_RS10565 - cupin domain-containing protein, at 2,234,388 to 2,235,617 _RS10565 ABZR87_RS10570: ABZR87_RS10570 - peptidylprolyl isomerase, at 2,235,629 to 2,236,156 _RS10570 ABZR87_RS10575: ABZR87_RS10575 - metallophosphoesterase, at 2,236,204 to 2,237,280 _RS10575 Position (kb) 2235 2236 2237Strain fitness (log2 ratio) -3 -2 -1 0 1at 2234.710 kb on + strand, within ABZR87_RS10565at 2234.941 kb on + strand, within ABZR87_RS10565at 2234.941 kb on + strand, within ABZR87_RS10565at 2234.941 kb on + strand, within ABZR87_RS10565at 2234.941 kb on + strand, within ABZR87_RS10565at 2234.942 kb on - strand, within ABZR87_RS10565at 2234.980 kb on + strand, within ABZR87_RS10565at 2234.995 kb on + strand, within ABZR87_RS10565at 2234.995 kb on + strand, within ABZR87_RS10565at 2235.145 kb on + strand, within ABZR87_RS10565at 2235.145 kb on + strand, within ABZR87_RS10565at 2235.145 kb on + strand, within ABZR87_RS10565at 2235.418 kb on - strand, within ABZR87_RS10565at 2235.601 kb on - strandat 2235.646 kb on + strandat 2235.647 kb on - strandat 2235.665 kb on + strandat 2235.665 kb on + strandat 2235.666 kb on - strandat 2235.722 kb on + strand, within ABZR87_RS10570at 2235.722 kb on + strand, within ABZR87_RS10570at 2235.722 kb on + strand, within ABZR87_RS10570at 2235.723 kb on - strand, within ABZR87_RS10570at 2235.723 kb on - strand, within ABZR87_RS10570at 2235.723 kb on - strand, within ABZR87_RS10570at 2235.723 kb on - strand, within ABZR87_RS10570at 2235.723 kb on - strand, within ABZR87_RS10570at 2235.723 kb on - strand, within ABZR87_RS10570at 2235.723 kb on - strand, within ABZR87_RS10570at 2235.723 kb on - strand, within ABZR87_RS10570at 2235.737 kb on + strand, within ABZR87_RS10570at 2235.738 kb on - strand, within ABZR87_RS10570at 2235.792 kb on - strand, within ABZR87_RS10570at 2235.837 kb on - strand, within ABZR87_RS10570at 2235.837 kb on - strand, within ABZR87_RS10570at 2235.951 kb on - strand, within ABZR87_RS10570at 2236.167 kb on - strandat 2236.340 kb on + strand, within ABZR87_RS10575at 2236.340 kb on + strand, within ABZR87_RS10575at 2236.340 kb on + strand, within ABZR87_RS10575at 2236.341 kb on - strand, within ABZR87_RS10575at 2236.341 kb on - strand, within ABZR87_RS10575at 2236.341 kb on - strand, within ABZR87_RS10575at 2236.341 kb on - strand, within ABZR87_RS10575at 2236.452 kb on - strand, within ABZR87_RS10575at 2236.493 kb on + strand, within ABZR87_RS10575at 2236.494 kb on - strand, within ABZR87_RS10575at 2236.494 kb on - strand, within ABZR87_RS10575at 2236.519 kb on + strand, within ABZR87_RS10575at 2236.675 kb on + strand, within ABZR87_RS10575at 2236.677 kb on - strand, within ABZR87_RS10575at 2236.677 kb on - strand, within ABZR87_RS10575at 2236.706 kb on + strand, within ABZR87_RS10575at 2236.707 kb on - strand, within ABZR87_RS10575at 2236.707 kb on - strand, within ABZR87_RS10575at 2236.824 kb on + strand, within ABZR87_RS10575at 2236.824 kb on + strand, within ABZR87_RS10575at 2236.825 kb on - strand, within ABZR87_RS10575at 2236.825 kb on - strand, within ABZR87_RS10575at 2236.825 kb on - strand, within ABZR87_RS10575at 2236.825 kb on - strand, within ABZR87_RS10575at 2236.825 kb on - strand, within ABZR87_RS10575at 2236.856 kb on + strand, within ABZR87_RS10575at 2236.952 kb on + strand, within ABZR87_RS10575at 2236.952 kb on + strand, within ABZR87_RS10575at 2236.953 kb on - strand, within ABZR87_RS10575at 2236.953 kb on - strand, within ABZR87_RS10575at 2236.953 kb on - strand, within ABZR87_RS10575at 2236.953 kb on - strand, within ABZR87_RS10575at 2236.953 kb on - strand, within ABZR87_RS10575at 2236.953 kb on - strand, within ABZR87_RS10575

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,234,710 + ABZR87_RS10565 0.26 -2.0
2,234,941 + ABZR87_RS10565 0.45 -2.4
2,234,941 + ABZR87_RS10565 0.45 -2.7
2,234,941 + ABZR87_RS10565 0.45 -3.3
2,234,941 + ABZR87_RS10565 0.45 -2.5
2,234,942 - ABZR87_RS10565 0.45 -0.2
2,234,980 + ABZR87_RS10565 0.48 -2.4
2,234,995 + ABZR87_RS10565 0.49 -1.8
2,234,995 + ABZR87_RS10565 0.49 -0.2
2,235,145 + ABZR87_RS10565 0.62 -0.8
2,235,145 + ABZR87_RS10565 0.62 -0.5
2,235,145 + ABZR87_RS10565 0.62 -1.5
2,235,418 - ABZR87_RS10565 0.84 -2.5
2,235,601 - -0.4
2,235,646 + -1.0
2,235,647 - +0.2
2,235,665 + -1.1
2,235,665 + +0.0
2,235,666 - +0.1
2,235,722 + ABZR87_RS10570 0.18 -1.1
2,235,722 + ABZR87_RS10570 0.18 -1.0
2,235,722 + ABZR87_RS10570 0.18 -1.7
2,235,723 - ABZR87_RS10570 0.18 -0.5
2,235,723 - ABZR87_RS10570 0.18 +0.7
2,235,723 - ABZR87_RS10570 0.18 -0.1
2,235,723 - ABZR87_RS10570 0.18 +1.4
2,235,723 - ABZR87_RS10570 0.18 -2.8
2,235,723 - ABZR87_RS10570 0.18 -1.3
2,235,723 - ABZR87_RS10570 0.18 -0.4
2,235,723 - ABZR87_RS10570 0.18 -0.2
2,235,737 + ABZR87_RS10570 0.20 -0.8
2,235,738 - ABZR87_RS10570 0.21 -0.4
2,235,792 - ABZR87_RS10570 0.31 -0.1
2,235,837 - ABZR87_RS10570 0.39 +0.5
2,235,837 - ABZR87_RS10570 0.39 -2.1
2,235,951 - ABZR87_RS10570 0.61 -0.7
2,236,167 - +0.1
2,236,340 + ABZR87_RS10575 0.13 +0.6
2,236,340 + ABZR87_RS10575 0.13 +0.3
2,236,340 + ABZR87_RS10575 0.13 +0.3
2,236,341 - ABZR87_RS10575 0.13 -0.7
2,236,341 - ABZR87_RS10575 0.13 -0.1
2,236,341 - ABZR87_RS10575 0.13 -0.0
2,236,341 - ABZR87_RS10575 0.13 -0.2
2,236,452 - ABZR87_RS10575 0.23 -0.1
2,236,493 + ABZR87_RS10575 0.27 -0.4
2,236,494 - ABZR87_RS10575 0.27 +0.0
2,236,494 - ABZR87_RS10575 0.27 -0.2
2,236,519 + ABZR87_RS10575 0.29 -1.3
2,236,675 + ABZR87_RS10575 0.44 -0.2
2,236,677 - ABZR87_RS10575 0.44 +0.6
2,236,677 - ABZR87_RS10575 0.44 +1.1
2,236,706 + ABZR87_RS10575 0.47 -0.2
2,236,707 - ABZR87_RS10575 0.47 -0.5
2,236,707 - ABZR87_RS10575 0.47 +0.1
2,236,824 + ABZR87_RS10575 0.58 -0.1
2,236,824 + ABZR87_RS10575 0.58 +0.0
2,236,825 - ABZR87_RS10575 0.58 +0.1
2,236,825 - ABZR87_RS10575 0.58 -2.1
2,236,825 - ABZR87_RS10575 0.58 -0.8
2,236,825 - ABZR87_RS10575 0.58 +0.9
2,236,825 - ABZR87_RS10575 0.58 +0.0
2,236,856 + ABZR87_RS10575 0.61 +0.9
2,236,952 + ABZR87_RS10575 0.69 +0.4
2,236,952 + ABZR87_RS10575 0.69 +0.2
2,236,953 - ABZR87_RS10575 0.70 -0.6
2,236,953 - ABZR87_RS10575 0.70 -0.6
2,236,953 - ABZR87_RS10575 0.70 +0.4
2,236,953 - ABZR87_RS10575 0.70 -0.7
2,236,953 - ABZR87_RS10575 0.70 +0.5
2,236,953 - ABZR87_RS10575 0.70 +0.3

Or see this region's nucleotide sequence