Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07965

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07955 and ABZR87_RS07960 overlap by 8 nucleotidesABZR87_RS07960 and ABZR87_RS07965 are separated by 265 nucleotidesABZR87_RS07965 and ABZR87_RS07970 are separated by 94 nucleotidesABZR87_RS07970 and ABZR87_RS07975 are separated by 291 nucleotides ABZR87_RS07955: ABZR87_RS07955 - sensor histidine kinase, at 1,690,968 to 1,692,548 _RS07955 ABZR87_RS07960: ABZR87_RS07960 - response regulator transcription factor, at 1,692,541 to 1,693,254 _RS07960 ABZR87_RS07965: ABZR87_RS07965 - recombinase RecA, at 1,693,520 to 1,694,578 _RS07965 ABZR87_RS07970: ABZR87_RS07970 - recombination regulator RecX, at 1,694,673 to 1,695,152 _RS07970 ABZR87_RS07975: ABZR87_RS07975 - DUF2889 domain-containing protein, at 1,695,444 to 1,696,070 _RS07975 Position (kb) 1693 1694 1695Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1692.599 kb on + strandat 1692.599 kb on + strandat 1692.599 kb on + strandat 1692.600 kb on - strandat 1692.668 kb on + strand, within ABZR87_RS07960at 1692.668 kb on + strand, within ABZR87_RS07960at 1692.668 kb on + strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.820 kb on - strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1693.077 kb on + strand, within ABZR87_RS07960at 1693.078 kb on - strand, within ABZR87_RS07960at 1693.078 kb on - strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.113 kb on - strand, within ABZR87_RS07960at 1693.113 kb on - strand, within ABZR87_RS07960at 1693.113 kb on - strand, within ABZR87_RS07960at 1693.181 kb on + strand, within ABZR87_RS07960at 1693.181 kb on + strand, within ABZR87_RS07960at 1693.181 kb on + strand, within ABZR87_RS07960at 1693.181 kb on + strand, within ABZR87_RS07960at 1693.182 kb on - strand, within ABZR87_RS07960at 1693.182 kb on - strand, within ABZR87_RS07960at 1693.304 kb on + strandat 1693.304 kb on + strandat 1693.305 kb on - strandat 1693.366 kb on + strandat 1693.387 kb on + strandat 1693.387 kb on + strandat 1693.387 kb on + strandat 1693.387 kb on + strandat 1693.388 kb on - strandat 1693.388 kb on - strandat 1693.388 kb on - strandat 1693.492 kb on + strandat 1693.492 kb on + strandat 1693.492 kb on + strandat 1693.492 kb on + strandat 1693.493 kb on - strandat 1693.493 kb on - strandat 1693.493 kb on - strandat 1693.493 kb on - strandat 1693.493 kb on - strandat 1693.494 kb on + strandat 1693.494 kb on + strandat 1693.494 kb on + strandat 1693.494 kb on + strandat 1693.495 kb on - strandat 1693.495 kb on - strandat 1693.495 kb on - strandat 1693.531 kb on + strandat 1693.531 kb on + strandat 1693.531 kb on + strandat 1693.736 kb on + strand, within ABZR87_RS07965at 1693.737 kb on - strand, within ABZR87_RS07965at 1693.756 kb on + strand, within ABZR87_RS07965at 1693.757 kb on - strand, within ABZR87_RS07965at 1693.757 kb on - strand, within ABZR87_RS07965at 1694.150 kb on + strand, within ABZR87_RS07965at 1694.196 kb on - strand, within ABZR87_RS07965at 1694.196 kb on - strand, within ABZR87_RS07965at 1694.333 kb on + strand, within ABZR87_RS07965at 1694.333 kb on + strand, within ABZR87_RS07965at 1694.420 kb on + strand, within ABZR87_RS07965at 1694.420 kb on + strand, within ABZR87_RS07965at 1694.420 kb on + strand, within ABZR87_RS07965at 1694.420 kb on + strand, within ABZR87_RS07965at 1694.420 kb on + strand, within ABZR87_RS07965at 1694.420 kb on + strand, within ABZR87_RS07965at 1694.421 kb on - strand, within ABZR87_RS07965at 1694.421 kb on - strand, within ABZR87_RS07965at 1694.421 kb on - strand, within ABZR87_RS07965at 1694.421 kb on - strand, within ABZR87_RS07965at 1694.421 kb on - strand, within ABZR87_RS07965at 1694.465 kb on + strand, within ABZR87_RS07965at 1694.465 kb on + strand, within ABZR87_RS07965at 1694.465 kb on + strand, within ABZR87_RS07965at 1694.466 kb on - strand, within ABZR87_RS07965at 1694.466 kb on - strand, within ABZR87_RS07965at 1694.576 kb on + strandat 1694.576 kb on + strandat 1694.577 kb on - strandat 1694.577 kb on - strandat 1694.612 kb on - strandat 1694.612 kb on - strandat 1694.623 kb on + strandat 1694.624 kb on - strandat 1694.624 kb on - strandat 1694.624 kb on - strandat 1694.624 kb on - strandat 1694.624 kb on - strandat 1694.672 kb on + strandat 1694.672 kb on + strandat 1694.673 kb on - strandat 1694.673 kb on - strandat 1694.673 kb on - strandat 1694.721 kb on + strand, within ABZR87_RS07970at 1694.722 kb on - strand, within ABZR87_RS07970at 1694.722 kb on - strand, within ABZR87_RS07970at 1694.722 kb on - strand, within ABZR87_RS07970at 1694.722 kb on - strand, within ABZR87_RS07970at 1694.725 kb on + strand, within ABZR87_RS07970at 1694.725 kb on + strand, within ABZR87_RS07970at 1694.726 kb on - strand, within ABZR87_RS07970at 1694.726 kb on - strand, within ABZR87_RS07970at 1694.726 kb on - strand, within ABZR87_RS07970at 1694.726 kb on - strand, within ABZR87_RS07970at 1694.726 kb on - strand, within ABZR87_RS07970at 1694.726 kb on - strand, within ABZR87_RS07970at 1694.726 kb on - strand, within ABZR87_RS07970at 1694.741 kb on + strand, within ABZR87_RS07970at 1694.741 kb on + strand, within ABZR87_RS07970at 1694.741 kb on + strand, within ABZR87_RS07970at 1694.741 kb on + strand, within ABZR87_RS07970at 1694.741 kb on + strand, within ABZR87_RS07970at 1694.742 kb on - strand, within ABZR87_RS07970at 1694.742 kb on - strand, within ABZR87_RS07970at 1694.762 kb on + strand, within ABZR87_RS07970at 1694.844 kb on - strand, within ABZR87_RS07970at 1694.844 kb on - strand, within ABZR87_RS07970at 1694.844 kb on - strand, within ABZR87_RS07970at 1694.972 kb on + strand, within ABZR87_RS07970at 1695.060 kb on + strand, within ABZR87_RS07970at 1695.060 kb on + strand, within ABZR87_RS07970at 1695.060 kb on + strand, within ABZR87_RS07970at 1695.060 kb on + strand, within ABZR87_RS07970at 1695.060 kb on + strand, within ABZR87_RS07970at 1695.060 kb on + strand, within ABZR87_RS07970at 1695.060 kb on + strand, within ABZR87_RS07970at 1695.060 kb on + strand, within ABZR87_RS07970at 1695.060 kb on + strand, within ABZR87_RS07970at 1695.061 kb on - strand, within ABZR87_RS07970at 1695.061 kb on - strand, within ABZR87_RS07970at 1695.061 kb on - strand, within ABZR87_RS07970at 1695.061 kb on - strand, within ABZR87_RS07970at 1695.061 kb on - strand, within ABZR87_RS07970at 1695.061 kb on - strand, within ABZR87_RS07970at 1695.061 kb on - strand, within ABZR87_RS07970at 1695.341 kb on + strandat 1695.341 kb on + strandat 1695.341 kb on + strandat 1695.341 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.426 kb on + strandat 1695.507 kb on + strand, within ABZR87_RS07975at 1695.569 kb on + strand, within ABZR87_RS07975

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,692,599 + -2.8
1,692,599 + -1.3
1,692,599 + -1.4
1,692,600 - -3.4
1,692,668 + ABZR87_RS07960 0.18 -0.5
1,692,668 + ABZR87_RS07960 0.18 -3.0
1,692,668 + ABZR87_RS07960 0.18 -1.5
1,692,669 - ABZR87_RS07960 0.18 -2.1
1,692,669 - ABZR87_RS07960 0.18 -2.3
1,692,669 - ABZR87_RS07960 0.18 -1.0
1,692,669 - ABZR87_RS07960 0.18 -1.7
1,692,669 - ABZR87_RS07960 0.18 -2.3
1,692,669 - ABZR87_RS07960 0.18 -1.8
1,692,669 - ABZR87_RS07960 0.18 -2.4
1,692,669 - ABZR87_RS07960 0.18 -1.9
1,692,669 - ABZR87_RS07960 0.18 -3.0
1,692,669 - ABZR87_RS07960 0.18 -2.1
1,692,820 - ABZR87_RS07960 0.39 -1.0
1,692,821 + ABZR87_RS07960 0.39 -3.1
1,692,821 + ABZR87_RS07960 0.39 -0.6
1,692,821 + ABZR87_RS07960 0.39 -3.7
1,692,821 + ABZR87_RS07960 0.39 -2.2
1,692,821 + ABZR87_RS07960 0.39 -2.8
1,692,821 + ABZR87_RS07960 0.39 -0.6
1,692,821 + ABZR87_RS07960 0.39 +1.0
1,692,821 + ABZR87_RS07960 0.39 -2.3
1,692,821 + ABZR87_RS07960 0.39 -3.6
1,692,821 + ABZR87_RS07960 0.39 -2.5
1,692,821 + ABZR87_RS07960 0.39 -1.9
1,692,821 + ABZR87_RS07960 0.39 -1.1
1,692,821 + ABZR87_RS07960 0.39 -1.8
1,692,821 + ABZR87_RS07960 0.39 -0.8
1,692,821 + ABZR87_RS07960 0.39 -1.5
1,692,821 + ABZR87_RS07960 0.39 -1.3
1,692,822 - ABZR87_RS07960 0.39 -2.4
1,692,822 - ABZR87_RS07960 0.39 -2.4
1,692,822 - ABZR87_RS07960 0.39 +1.0
1,692,822 - ABZR87_RS07960 0.39 -2.9
1,692,822 - ABZR87_RS07960 0.39 -1.6
1,692,822 - ABZR87_RS07960 0.39 -2.0
1,692,822 - ABZR87_RS07960 0.39 -2.1
1,692,953 + ABZR87_RS07960 0.58 -2.9
1,692,953 + ABZR87_RS07960 0.58 -1.9
1,692,953 + ABZR87_RS07960 0.58 +0.0
1,692,953 + ABZR87_RS07960 0.58 -1.3
1,692,953 + ABZR87_RS07960 0.58 -3.8
1,692,953 + ABZR87_RS07960 0.58 -1.4
1,692,953 + ABZR87_RS07960 0.58 -2.6
1,692,954 - ABZR87_RS07960 0.58 -1.5
1,692,954 - ABZR87_RS07960 0.58 -1.7
1,692,954 - ABZR87_RS07960 0.58 -0.5
1,692,954 - ABZR87_RS07960 0.58 -2.6
1,692,954 - ABZR87_RS07960 0.58 -1.9
1,692,954 - ABZR87_RS07960 0.58 -3.0
1,692,954 - ABZR87_RS07960 0.58 -0.8
1,693,077 + ABZR87_RS07960 0.75 -1.5
1,693,078 - ABZR87_RS07960 0.75 -4.1
1,693,078 - ABZR87_RS07960 0.75 -2.1
1,693,112 + ABZR87_RS07960 0.80 -1.6
1,693,112 + ABZR87_RS07960 0.80 -2.1
1,693,112 + ABZR87_RS07960 0.80 -1.1
1,693,112 + ABZR87_RS07960 0.80 -0.7
1,693,112 + ABZR87_RS07960 0.80 -0.2
1,693,112 + ABZR87_RS07960 0.80 -2.5
1,693,112 + ABZR87_RS07960 0.80 -2.3
1,693,112 + ABZR87_RS07960 0.80 -0.6
1,693,112 + ABZR87_RS07960 0.80 -2.6
1,693,112 + ABZR87_RS07960 0.80 -1.5
1,693,112 + ABZR87_RS07960 0.80 -2.3
1,693,112 + ABZR87_RS07960 0.80 +0.0
1,693,112 + ABZR87_RS07960 0.80 -2.7
1,693,113 - ABZR87_RS07960 0.80 -2.5
1,693,113 - ABZR87_RS07960 0.80 -1.4
1,693,113 - ABZR87_RS07960 0.80 -2.2
1,693,181 + ABZR87_RS07960 0.90 -3.4
1,693,181 + ABZR87_RS07960 0.90 -3.3
1,693,181 + ABZR87_RS07960 0.90 -2.8
1,693,181 + ABZR87_RS07960 0.90 -2.8
1,693,182 - ABZR87_RS07960 0.90 -2.4
1,693,182 - ABZR87_RS07960 0.90 -2.0
1,693,304 + -0.9
1,693,304 + -0.6
1,693,305 - -0.6
1,693,366 + -2.4
1,693,387 + -1.6
1,693,387 + -2.1
1,693,387 + -2.7
1,693,387 + -3.0
1,693,388 - +0.4
1,693,388 - +0.6
1,693,388 - -0.2
1,693,492 + -2.5
1,693,492 + -1.7
1,693,492 + -1.7
1,693,492 + -1.5
1,693,493 - -0.2
1,693,493 - -0.1
1,693,493 - -0.7
1,693,493 - +0.2
1,693,493 - +0.0
1,693,494 + -2.6
1,693,494 + -1.7
1,693,494 + -1.4
1,693,494 + -2.3
1,693,495 - -0.4
1,693,495 - -1.0
1,693,495 - +0.1
1,693,531 + -0.4
1,693,531 + -1.0
1,693,531 + +0.5
1,693,736 + ABZR87_RS07965 0.20 +0.8
1,693,737 - ABZR87_RS07965 0.20 -0.7
1,693,756 + ABZR87_RS07965 0.22 -0.2
1,693,757 - ABZR87_RS07965 0.22 -0.4
1,693,757 - ABZR87_RS07965 0.22 +0.3
1,694,150 + ABZR87_RS07965 0.59 -0.9
1,694,196 - ABZR87_RS07965 0.64 -0.5
1,694,196 - ABZR87_RS07965 0.64 +0.5
1,694,333 + ABZR87_RS07965 0.77 +0.3
1,694,333 + ABZR87_RS07965 0.77 -0.5
1,694,420 + ABZR87_RS07965 0.85 +0.3
1,694,420 + ABZR87_RS07965 0.85 -1.4
1,694,420 + ABZR87_RS07965 0.85 +0.0
1,694,420 + ABZR87_RS07965 0.85 +0.2
1,694,420 + ABZR87_RS07965 0.85 -0.3
1,694,420 + ABZR87_RS07965 0.85 -0.6
1,694,421 - ABZR87_RS07965 0.85 +0.4
1,694,421 - ABZR87_RS07965 0.85 -2.5
1,694,421 - ABZR87_RS07965 0.85 +0.6
1,694,421 - ABZR87_RS07965 0.85 +0.2
1,694,421 - ABZR87_RS07965 0.85 +0.3
1,694,465 + ABZR87_RS07965 0.89 +0.8
1,694,465 + ABZR87_RS07965 0.89 -0.1
1,694,465 + ABZR87_RS07965 0.89 -1.3
1,694,466 - ABZR87_RS07965 0.89 +1.8
1,694,466 - ABZR87_RS07965 0.89 +0.1
1,694,576 + -0.6
1,694,576 + -0.4
1,694,577 - +1.0
1,694,577 - -0.9
1,694,612 - +1.9
1,694,612 - -1.0
1,694,623 + +3.5
1,694,624 - +0.0
1,694,624 - -0.2
1,694,624 - +0.0
1,694,624 - +0.0
1,694,624 - -0.0
1,694,672 + -0.2
1,694,672 + -0.9
1,694,673 - -0.2
1,694,673 - +0.3
1,694,673 - +0.1
1,694,721 + ABZR87_RS07970 0.10 +1.4
1,694,722 - ABZR87_RS07970 0.10 +0.0
1,694,722 - ABZR87_RS07970 0.10 -0.6
1,694,722 - ABZR87_RS07970 0.10 +1.0
1,694,722 - ABZR87_RS07970 0.10 +0.3
1,694,725 + ABZR87_RS07970 0.11 -0.3
1,694,725 + ABZR87_RS07970 0.11 +0.6
1,694,726 - ABZR87_RS07970 0.11 +0.3
1,694,726 - ABZR87_RS07970 0.11 -0.1
1,694,726 - ABZR87_RS07970 0.11 -0.4
1,694,726 - ABZR87_RS07970 0.11 +0.4
1,694,726 - ABZR87_RS07970 0.11 +0.1
1,694,726 - ABZR87_RS07970 0.11 +0.1
1,694,726 - ABZR87_RS07970 0.11 +0.6
1,694,741 + ABZR87_RS07970 0.14 -0.4
1,694,741 + ABZR87_RS07970 0.14 +1.3
1,694,741 + ABZR87_RS07970 0.14 +0.2
1,694,741 + ABZR87_RS07970 0.14 +0.8
1,694,741 + ABZR87_RS07970 0.14 +0.4
1,694,742 - ABZR87_RS07970 0.14 +0.0
1,694,742 - ABZR87_RS07970 0.14 +0.1
1,694,762 + ABZR87_RS07970 0.19 -1.0
1,694,844 - ABZR87_RS07970 0.36 +0.5
1,694,844 - ABZR87_RS07970 0.36 -0.3
1,694,844 - ABZR87_RS07970 0.36 -2.0
1,694,972 + ABZR87_RS07970 0.62 +1.7
1,695,060 + ABZR87_RS07970 0.81 +0.3
1,695,060 + ABZR87_RS07970 0.81 +0.3
1,695,060 + ABZR87_RS07970 0.81 +1.3
1,695,060 + ABZR87_RS07970 0.81 -0.1
1,695,060 + ABZR87_RS07970 0.81 -0.4
1,695,060 + ABZR87_RS07970 0.81 -0.6
1,695,060 + ABZR87_RS07970 0.81 +0.2
1,695,060 + ABZR87_RS07970 0.81 -0.3
1,695,060 + ABZR87_RS07970 0.81 -0.2
1,695,061 - ABZR87_RS07970 0.81 -1.2
1,695,061 - ABZR87_RS07970 0.81 -0.4
1,695,061 - ABZR87_RS07970 0.81 -0.8
1,695,061 - ABZR87_RS07970 0.81 -0.1
1,695,061 - ABZR87_RS07970 0.81 +0.5
1,695,061 - ABZR87_RS07970 0.81 +0.2
1,695,061 - ABZR87_RS07970 0.81 +0.7
1,695,341 + +1.8
1,695,341 + +1.4
1,695,341 + +0.1
1,695,341 + -0.1
1,695,375 + -0.6
1,695,375 + +0.5
1,695,375 + -1.4
1,695,375 + -1.0
1,695,375 + +0.8
1,695,375 + +0.8
1,695,426 + +1.3
1,695,507 + ABZR87_RS07975 0.10 -0.7
1,695,569 + ABZR87_RS07975 0.20 -0.7

Or see this region's nucleotide sequence