Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07555

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07550 and ABZR87_RS07555 are separated by 4 nucleotidesABZR87_RS07555 and ABZR87_RS07565 are separated by 356 nucleotides ABZR87_RS07550: ABZR87_RS07550 - dihydroorotase, at 1,603,766 to 1,604,800 _RS07550 ABZR87_RS07555: ABZR87_RS07555 - DUF3025 domain-containing protein, at 1,604,805 to 1,605,605 _RS07555 ABZR87_RS07565: ABZR87_RS07565 - OsmC family protein, at 1,605,962 to 1,606,408 _RS07565 Position (kb) 1604 1605 1606Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1605.013 kb on - strand, within ABZR87_RS07555at 1605.363 kb on + strand, within ABZR87_RS07555at 1605.363 kb on + strand, within ABZR87_RS07555at 1605.363 kb on + strand, within ABZR87_RS07555at 1605.363 kb on + strand, within ABZR87_RS07555at 1605.364 kb on - strand, within ABZR87_RS07555at 1605.364 kb on - strand, within ABZR87_RS07555at 1605.364 kb on - strand, within ABZR87_RS07555at 1605.546 kb on + strandat 1605.546 kb on + strandat 1605.547 kb on - strandat 1605.547 kb on - strandat 1605.547 kb on - strandat 1605.547 kb on - strandat 1605.547 kb on - strandat 1605.590 kb on - strandat 1605.603 kb on + strandat 1605.603 kb on + strandat 1605.603 kb on + strandat 1605.603 kb on + strandat 1605.603 kb on + strandat 1605.603 kb on + strandat 1605.603 kb on + strandat 1605.604 kb on - strandat 1605.604 kb on - strandat 1605.964 kb on - strandat 1606.056 kb on + strand, within ABZR87_RS07565at 1606.056 kb on + strand, within ABZR87_RS07565at 1606.056 kb on + strand, within ABZR87_RS07565at 1606.056 kb on + strand, within ABZR87_RS07565at 1606.056 kb on + strand, within ABZR87_RS07565at 1606.057 kb on - strand, within ABZR87_RS07565at 1606.057 kb on - strand, within ABZR87_RS07565at 1606.057 kb on - strand, within ABZR87_RS07565at 1606.057 kb on - strand, within ABZR87_RS07565at 1606.202 kb on + strand, within ABZR87_RS07565at 1606.202 kb on + strand, within ABZR87_RS07565at 1606.202 kb on + strand, within ABZR87_RS07565at 1606.202 kb on + strand, within ABZR87_RS07565at 1606.202 kb on + strand, within ABZR87_RS07565at 1606.202 kb on + strand, within ABZR87_RS07565at 1606.202 kb on + strand, within ABZR87_RS07565at 1606.203 kb on - strand, within ABZR87_RS07565at 1606.203 kb on - strand, within ABZR87_RS07565at 1606.242 kb on + strand, within ABZR87_RS07565at 1606.243 kb on - strand, within ABZR87_RS07565at 1606.459 kb on + strandat 1606.460 kb on - strandat 1606.460 kb on - strandat 1606.460 kb on - strandat 1606.460 kb on - strandat 1606.490 kb on + strandat 1606.490 kb on + strandat 1606.491 kb on - strandat 1606.583 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,605,013 - ABZR87_RS07555 0.26 +3.1
1,605,363 + ABZR87_RS07555 0.70 -1.3
1,605,363 + ABZR87_RS07555 0.70 -0.3
1,605,363 + ABZR87_RS07555 0.70 -0.2
1,605,363 + ABZR87_RS07555 0.70 -0.3
1,605,364 - ABZR87_RS07555 0.70 +0.1
1,605,364 - ABZR87_RS07555 0.70 +0.2
1,605,364 - ABZR87_RS07555 0.70 +0.1
1,605,546 + +0.6
1,605,546 + -0.4
1,605,547 - -0.0
1,605,547 - +0.7
1,605,547 - +0.5
1,605,547 - -1.2
1,605,547 - -0.4
1,605,590 - +0.7
1,605,603 + +0.4
1,605,603 + -1.4
1,605,603 + +0.3
1,605,603 + -0.9
1,605,603 + -1.1
1,605,603 + +0.5
1,605,603 + +0.2
1,605,604 - -0.2
1,605,604 - -0.6
1,605,964 - -0.4
1,606,056 + ABZR87_RS07565 0.21 -0.4
1,606,056 + ABZR87_RS07565 0.21 -0.4
1,606,056 + ABZR87_RS07565 0.21 -2.0
1,606,056 + ABZR87_RS07565 0.21 -2.3
1,606,056 + ABZR87_RS07565 0.21 -0.6
1,606,057 - ABZR87_RS07565 0.21 +0.7
1,606,057 - ABZR87_RS07565 0.21 -0.1
1,606,057 - ABZR87_RS07565 0.21 -0.4
1,606,057 - ABZR87_RS07565 0.21 +1.2
1,606,202 + ABZR87_RS07565 0.54 -1.4
1,606,202 + ABZR87_RS07565 0.54 -2.2
1,606,202 + ABZR87_RS07565 0.54 -0.8
1,606,202 + ABZR87_RS07565 0.54 -0.9
1,606,202 + ABZR87_RS07565 0.54 +1.1
1,606,202 + ABZR87_RS07565 0.54 -1.3
1,606,202 + ABZR87_RS07565 0.54 -0.3
1,606,203 - ABZR87_RS07565 0.54 -0.5
1,606,203 - ABZR87_RS07565 0.54 -0.8
1,606,242 + ABZR87_RS07565 0.63 -0.2
1,606,243 - ABZR87_RS07565 0.63 -0.5
1,606,459 + -0.2
1,606,460 - +0.3
1,606,460 - +0.9
1,606,460 - +0.6
1,606,460 - +0.2
1,606,490 + +0.5
1,606,490 + -0.1
1,606,491 - +1.1
1,606,583 + -1.0

Or see this region's nucleotide sequence