Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07075 and ABZR87_RS07080 are separated by 4 nucleotides ABZR87_RS07080 and ABZR87_RS07085 are separated by 15 nucleotides ABZR87_RS07085 and ABZR87_RS07090 are separated by 305 nucleotides
ABZR87_RS07075: ABZR87_RS07075 - LPS export ABC transporter periplasmic protein LptC, at 1,493,377 to 1,494,009
_RS07075
ABZR87_RS07080: ABZR87_RS07080 - HAD family hydrolase, at 1,494,014 to 1,494,610
_RS07080
ABZR87_RS07085: ABZR87_RS07085 - KpsF/GutQ family sugar-phosphate isomerase, at 1,494,626 to 1,495,609
_RS07085
ABZR87_RS07090: ABZR87_RS07090 - monovalent cation:proton antiporter family protein, at 1,495,915 to 1,497,894
_RS07090
Position (kb)
1494
1495
1496 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1494.061 kb on - strand at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.235 kb on - strand, within ABZR87_RS07080 at 1494.235 kb on - strand, within ABZR87_RS07080 at 1494.235 kb on - strand, within ABZR87_RS07080 at 1494.313 kb on - strand, within ABZR87_RS07080 at 1494.313 kb on - strand, within ABZR87_RS07080 at 1494.313 kb on - strand, within ABZR87_RS07080 at 1494.313 kb on - strand, within ABZR87_RS07080 at 1495.605 kb on - strand at 1495.621 kb on - strand at 1495.621 kb on - strand at 1495.621 kb on - strand at 1495.621 kb on - strand at 1495.621 kb on - strand at 1495.621 kb on - strand at 1495.621 kb on - strand at 1495.621 kb on - strand at 1495.621 kb on - strand at 1495.621 kb on - strand at 1495.622 kb on + strand at 1495.622 kb on + strand at 1495.802 kb on + strand at 1495.802 kb on + strand at 1495.802 kb on + strand at 1495.803 kb on - strand at 1495.803 kb on - strand at 1495.803 kb on - strand at 1495.803 kb on - strand at 1495.803 kb on - strand at 1495.804 kb on + strand at 1495.804 kb on + strand at 1495.804 kb on + strand at 1495.804 kb on + strand at 1495.805 kb on - strand at 1495.805 kb on - strand at 1496.011 kb on + strand at 1496.011 kb on + strand at 1496.011 kb on + strand at 1496.011 kb on + strand at 1496.011 kb on + strand at 1496.012 kb on - strand at 1496.012 kb on - strand at 1496.012 kb on - strand at 1496.012 kb on - strand at 1496.080 kb on + strand at 1496.081 kb on - strand at 1496.081 kb on - strand at 1496.081 kb on - strand at 1496.246 kb on - strand, within ABZR87_RS07090 at 1496.451 kb on - strand, within ABZR87_RS07090 at 1496.451 kb on - strand, within ABZR87_RS07090 at 1496.451 kb on - strand, within ABZR87_RS07090
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,494,061 - -0.1 1,494,136 - ABZR87_RS07080 0.20 +1.6 1,494,136 - ABZR87_RS07080 0.20 -1.5 1,494,136 - ABZR87_RS07080 0.20 +0.5 1,494,136 - ABZR87_RS07080 0.20 -1.1 1,494,136 - ABZR87_RS07080 0.20 -0.1 1,494,136 - ABZR87_RS07080 0.20 +0.5 1,494,235 - ABZR87_RS07080 0.37 +0.3 1,494,235 - ABZR87_RS07080 0.37 +1.2 1,494,235 - ABZR87_RS07080 0.37 +0.9 1,494,313 - ABZR87_RS07080 0.50 -0.2 1,494,313 - ABZR87_RS07080 0.50 -0.1 1,494,313 - ABZR87_RS07080 0.50 +0.1 1,494,313 - ABZR87_RS07080 0.50 +1.7 1,495,605 - -0.4 1,495,621 - +0.4 1,495,621 - +0.5 1,495,621 - -0.3 1,495,621 - -0.3 1,495,621 - -0.6 1,495,621 - -0.0 1,495,621 - -0.6 1,495,621 - -0.2 1,495,621 - -1.2 1,495,621 - -0.5 1,495,622 + -1.0 1,495,622 + -1.0 1,495,802 + +0.4 1,495,802 + +2.4 1,495,802 + +1.7 1,495,803 - +0.1 1,495,803 - -0.7 1,495,803 - +0.2 1,495,803 - -1.8 1,495,803 - +0.2 1,495,804 + -0.6 1,495,804 + -0.2 1,495,804 + -1.3 1,495,804 + +0.2 1,495,805 - -0.9 1,495,805 - -0.2 1,496,011 + +0.4 1,496,011 + +0.4 1,496,011 + -0.7 1,496,011 + +0.0 1,496,011 + -0.4 1,496,012 - +1.2 1,496,012 - +1.2 1,496,012 - -0.3 1,496,012 - -1.6 1,496,080 + -0.6 1,496,081 - +0.2 1,496,081 - +1.9 1,496,081 - -1.0 1,496,246 - ABZR87_RS07090 0.17 -2.0 1,496,451 - ABZR87_RS07090 0.27 +0.2 1,496,451 - ABZR87_RS07090 0.27 -0.4 1,496,451 - ABZR87_RS07090 0.27 +0.7
Or see this region's nucleotide sequence