Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07065

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS07060 and ABZR87_RS07065 are separated by 96 nucleotidesABZR87_RS07065 and ABZR87_RS07070 are separated by 30 nucleotidesABZR87_RS07070 and ABZR87_RS07075 are separated by 59 nucleotides ABZR87_RS07060: ABZR87_RS07060 - RNA polymerase factor sigma-54, at 1,490,303 to 1,491,814 _RS07060 ABZR87_RS07065: ABZR87_RS07065 - LPS export ABC transporter ATP-binding protein, at 1,491,911 to 1,492,699 _RS07065 ABZR87_RS07070: ABZR87_RS07070 - lipopolysaccharide transport periplasmic protein LptA, at 1,492,730 to 1,493,317 _RS07070 ABZR87_RS07075: ABZR87_RS07075 - LPS export ABC transporter periplasmic protein LptC, at 1,493,377 to 1,494,009 _RS07075 Position (kb) 1491 1492 1493Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1491.039 kb on + strand, within ABZR87_RS07060at 1491.039 kb on + strand, within ABZR87_RS07060at 1491.273 kb on + strand, within ABZR87_RS07060at 1491.273 kb on + strand, within ABZR87_RS07060at 1491.274 kb on - strand, within ABZR87_RS07060at 1491.274 kb on - strand, within ABZR87_RS07060at 1491.274 kb on - strand, within ABZR87_RS07060at 1491.274 kb on - strand, within ABZR87_RS07060at 1491.274 kb on - strand, within ABZR87_RS07060at 1491.274 kb on - strand, within ABZR87_RS07060at 1491.274 kb on - strand, within ABZR87_RS07060at 1491.276 kb on - strand, within ABZR87_RS07060at 1491.449 kb on + strand, within ABZR87_RS07060at 1491.450 kb on - strand, within ABZR87_RS07060at 1491.450 kb on - strand, within ABZR87_RS07060at 1491.478 kb on - strand, within ABZR87_RS07060at 1491.519 kb on + strand, within ABZR87_RS07060at 1491.520 kb on - strand, within ABZR87_RS07060at 1491.821 kb on + strandat 1491.822 kb on - strandat 1491.822 kb on - strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.827 kb on - strandat 1491.888 kb on - strandat 1491.894 kb on + strandat 1491.894 kb on + strandat 1491.894 kb on + strandat 1491.912 kb on + strandat 1491.912 kb on + strandat 1491.912 kb on + strandat 1491.912 kb on + strandat 1491.912 kb on + strandat 1491.913 kb on - strandat 1491.913 kb on - strandat 1492.700 kb on - strandat 1493.378 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
1,491,039 + ABZR87_RS07060 0.49 -1.7
1,491,039 + ABZR87_RS07060 0.49 -2.7
1,491,273 + ABZR87_RS07060 0.64 -3.4
1,491,273 + ABZR87_RS07060 0.64 -2.8
1,491,274 - ABZR87_RS07060 0.64 -4.0
1,491,274 - ABZR87_RS07060 0.64 -1.5
1,491,274 - ABZR87_RS07060 0.64 -2.5
1,491,274 - ABZR87_RS07060 0.64 -2.0
1,491,274 - ABZR87_RS07060 0.64 -0.4
1,491,274 - ABZR87_RS07060 0.64 -5.1
1,491,274 - ABZR87_RS07060 0.64 -3.0
1,491,276 - ABZR87_RS07060 0.64 -1.8
1,491,449 + ABZR87_RS07060 0.76 -3.4
1,491,450 - ABZR87_RS07060 0.76 -3.8
1,491,450 - ABZR87_RS07060 0.76 -2.7
1,491,478 - ABZR87_RS07060 0.78 -4.0
1,491,519 + ABZR87_RS07060 0.80 -2.7
1,491,520 - ABZR87_RS07060 0.80 -3.3
1,491,821 + -2.0
1,491,822 - -0.1
1,491,822 - +0.9
1,491,826 + +1.3
1,491,826 + +1.2
1,491,826 + +0.7
1,491,826 + +1.2
1,491,826 + +0.2
1,491,826 + +0.9
1,491,826 + +1.0
1,491,826 + +1.5
1,491,827 - +1.9
1,491,888 - +0.9
1,491,894 + -0.2
1,491,894 + -0.5
1,491,894 + +0.3
1,491,912 + +0.2
1,491,912 + -0.1
1,491,912 + -0.1
1,491,912 + +1.0
1,491,912 + -0.0
1,491,913 - +0.3
1,491,913 - -1.1
1,492,700 - -0.2
1,493,378 + -0.2

Or see this region's nucleotide sequence