Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07060 and ABZR87_RS07065 are separated by 96 nucleotides ABZR87_RS07065 and ABZR87_RS07070 are separated by 30 nucleotides ABZR87_RS07070 and ABZR87_RS07075 are separated by 59 nucleotides
ABZR87_RS07060: ABZR87_RS07060 - RNA polymerase factor sigma-54, at 1,490,303 to 1,491,814
_RS07060
ABZR87_RS07065: ABZR87_RS07065 - LPS export ABC transporter ATP-binding protein, at 1,491,911 to 1,492,699
_RS07065
ABZR87_RS07070: ABZR87_RS07070 - lipopolysaccharide transport periplasmic protein LptA, at 1,492,730 to 1,493,317
_RS07070
ABZR87_RS07075: ABZR87_RS07075 - LPS export ABC transporter periplasmic protein LptC, at 1,493,377 to 1,494,009
_RS07075
Position (kb)
1491
1492
1493 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1491.039 kb on + strand, within ABZR87_RS07060 at 1491.039 kb on + strand, within ABZR87_RS07060 at 1491.273 kb on + strand, within ABZR87_RS07060 at 1491.273 kb on + strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.276 kb on - strand, within ABZR87_RS07060 at 1491.449 kb on + strand, within ABZR87_RS07060 at 1491.450 kb on - strand, within ABZR87_RS07060 at 1491.450 kb on - strand, within ABZR87_RS07060 at 1491.478 kb on - strand, within ABZR87_RS07060 at 1491.519 kb on + strand, within ABZR87_RS07060 at 1491.520 kb on - strand, within ABZR87_RS07060 at 1491.821 kb on + strand at 1491.822 kb on - strand at 1491.822 kb on - strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.827 kb on - strand at 1491.888 kb on - strand at 1491.894 kb on + strand at 1491.894 kb on + strand at 1491.894 kb on + strand at 1491.912 kb on + strand at 1491.912 kb on + strand at 1491.912 kb on + strand at 1491.912 kb on + strand at 1491.912 kb on + strand at 1491.913 kb on - strand at 1491.913 kb on - strand at 1492.700 kb on - strand at 1493.378 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,491,039 + ABZR87_RS07060 0.49 -1.7 1,491,039 + ABZR87_RS07060 0.49 -2.7 1,491,273 + ABZR87_RS07060 0.64 -3.4 1,491,273 + ABZR87_RS07060 0.64 -2.8 1,491,274 - ABZR87_RS07060 0.64 -4.0 1,491,274 - ABZR87_RS07060 0.64 -1.5 1,491,274 - ABZR87_RS07060 0.64 -2.5 1,491,274 - ABZR87_RS07060 0.64 -2.0 1,491,274 - ABZR87_RS07060 0.64 -0.4 1,491,274 - ABZR87_RS07060 0.64 -5.1 1,491,274 - ABZR87_RS07060 0.64 -3.0 1,491,276 - ABZR87_RS07060 0.64 -1.8 1,491,449 + ABZR87_RS07060 0.76 -3.4 1,491,450 - ABZR87_RS07060 0.76 -3.8 1,491,450 - ABZR87_RS07060 0.76 -2.7 1,491,478 - ABZR87_RS07060 0.78 -4.0 1,491,519 + ABZR87_RS07060 0.80 -2.7 1,491,520 - ABZR87_RS07060 0.80 -3.3 1,491,821 + -2.0 1,491,822 - -0.1 1,491,822 - +0.9 1,491,826 + +1.3 1,491,826 + +1.2 1,491,826 + +0.7 1,491,826 + +1.2 1,491,826 + +0.2 1,491,826 + +0.9 1,491,826 + +1.0 1,491,826 + +1.5 1,491,827 - +1.9 1,491,888 - +0.9 1,491,894 + -0.2 1,491,894 + -0.5 1,491,894 + +0.3 1,491,912 + +0.2 1,491,912 + -0.1 1,491,912 + -0.1 1,491,912 + +1.0 1,491,912 + -0.0 1,491,913 - +0.3 1,491,913 - -1.1 1,492,700 - -0.2 1,493,378 + -0.2
Or see this region's nucleotide sequence