Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05580

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05570 and ABZR87_RS05575 are separated by 13 nucleotidesABZR87_RS05575 and ABZR87_RS05580 are separated by 89 nucleotidesABZR87_RS05580 and ABZR87_RS05585 are separated by 46 nucleotides ABZR87_RS05570: ABZR87_RS05570 - lysophospholipid acyltransferase family protein, at 1,184,313 to 1,185,161 _RS05570 ABZR87_RS05575: ABZR87_RS05575 - lipid A biosynthesis lauroyl acyltransferase, at 1,185,175 to 1,186,068 _RS05575 ABZR87_RS05580: ABZR87_RS05580 - diaminopimelate epimerase, at 1,186,158 to 1,187,039 _RS05580 ABZR87_RS05585: ABZR87_RS05585 - polyphosphate kinase 2 family protein, at 1,187,086 to 1,187,913 _RS05585 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1185.174 kb on + strandat 1185.174 kb on + strandat 1185.175 kb on - strandat 1186.063 kb on + strandat 1186.063 kb on + strandat 1186.063 kb on + strandat 1186.063 kb on + strandat 1186.063 kb on + strandat 1186.063 kb on + strandat 1186.063 kb on + strandat 1186.064 kb on - strandat 1186.064 kb on - strandat 1186.064 kb on - strandat 1186.064 kb on - strandat 1186.064 kb on - strandat 1186.064 kb on - strandat 1186.064 kb on - strandat 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.110 kb on - strandat 1186.332 kb on + strand, within ABZR87_RS05580at 1186.683 kb on - strand, within ABZR87_RS05580at 1186.803 kb on + strand, within ABZR87_RS05580at 1186.804 kb on - strand, within ABZR87_RS05580at 1187.082 kb on + strandat 1187.083 kb on - strandat 1187.083 kb on - strandat 1187.083 kb on - strandat 1187.083 kb on - strandat 1187.083 kb on - strandat 1187.119 kb on + strandat 1187.120 kb on - strandat 1187.120 kb on - strandat 1187.120 kb on - strandat 1187.169 kb on + strand, within ABZR87_RS05585at 1187.169 kb on + strand, within ABZR87_RS05585at 1187.169 kb on + strand, within ABZR87_RS05585at 1187.169 kb on + strand, within ABZR87_RS05585at 1187.170 kb on - strand, within ABZR87_RS05585at 1187.170 kb on - strand, within ABZR87_RS05585at 1187.170 kb on - strand, within ABZR87_RS05585at 1187.170 kb on - strand, within ABZR87_RS05585at 1187.260 kb on + strand, within ABZR87_RS05585at 1187.261 kb on - strand, within ABZR87_RS05585at 1187.261 kb on - strand, within ABZR87_RS05585at 1187.307 kb on + strand, within ABZR87_RS05585at 1187.307 kb on + strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.416 kb on + strand, within ABZR87_RS05585at 1187.416 kb on + strand, within ABZR87_RS05585at 1187.417 kb on - strand, within ABZR87_RS05585at 1187.417 kb on - strand, within ABZR87_RS05585at 1187.482 kb on + strand, within ABZR87_RS05585at 1187.482 kb on + strand, within ABZR87_RS05585at 1187.483 kb on - strand, within ABZR87_RS05585at 1187.483 kb on - strand, within ABZR87_RS05585at 1187.483 kb on - strand, within ABZR87_RS05585at 1187.546 kb on - strand, within ABZR87_RS05585at 1187.616 kb on + strand, within ABZR87_RS05585at 1187.616 kb on + strand, within ABZR87_RS05585at 1187.616 kb on + strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.697 kb on + strand, within ABZR87_RS05585at 1187.697 kb on + strand, within ABZR87_RS05585at 1187.698 kb on - strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.728 kb on - strand, within ABZR87_RS05585at 1187.728 kb on - strand, within ABZR87_RS05585at 1187.728 kb on - strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.738 kb on - strand, within ABZR87_RS05585at 1187.738 kb on - strand, within ABZR87_RS05585at 1187.738 kb on - strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.869 kb on + strandat 1187.869 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,185,174 + +0.6
1,185,174 + +0.2
1,185,175 - +1.6
1,186,063 + -0.2
1,186,063 + +0.0
1,186,063 + +0.7
1,186,063 + +0.9
1,186,063 + +0.5
1,186,063 + +1.5
1,186,063 + -0.6
1,186,064 - +2.3
1,186,064 - +0.4
1,186,064 - +0.6
1,186,064 - -0.5
1,186,064 - -0.9
1,186,064 - +0.7
1,186,064 - +0.3
1,186,109 + -0.9
1,186,109 + -0.0
1,186,109 + +0.2
1,186,109 + +0.9
1,186,109 + -0.8
1,186,109 + +0.4
1,186,110 - -1.2
1,186,332 + ABZR87_RS05580 0.20 -0.2
1,186,683 - ABZR87_RS05580 0.60 -0.6
1,186,803 + ABZR87_RS05580 0.73 +0.3
1,186,804 - ABZR87_RS05580 0.73 -1.7
1,187,082 + -0.3
1,187,083 - -0.1
1,187,083 - +0.3
1,187,083 - -2.7
1,187,083 - -1.6
1,187,083 - +0.2
1,187,119 + +0.2
1,187,120 - +0.0
1,187,120 - -0.5
1,187,120 - -0.3
1,187,169 + ABZR87_RS05585 0.10 +0.1
1,187,169 + ABZR87_RS05585 0.10 +0.1
1,187,169 + ABZR87_RS05585 0.10 -2.8
1,187,169 + ABZR87_RS05585 0.10 +0.6
1,187,170 - ABZR87_RS05585 0.10 +0.0
1,187,170 - ABZR87_RS05585 0.10 -1.3
1,187,170 - ABZR87_RS05585 0.10 +1.1
1,187,170 - ABZR87_RS05585 0.10 -1.2
1,187,260 + ABZR87_RS05585 0.21 -0.4
1,187,261 - ABZR87_RS05585 0.21 -0.7
1,187,261 - ABZR87_RS05585 0.21 -1.3
1,187,307 + ABZR87_RS05585 0.27 +0.1
1,187,307 + ABZR87_RS05585 0.27 -0.1
1,187,308 - ABZR87_RS05585 0.27 +0.5
1,187,308 - ABZR87_RS05585 0.27 -0.2
1,187,308 - ABZR87_RS05585 0.27 +0.3
1,187,308 - ABZR87_RS05585 0.27 +0.3
1,187,308 - ABZR87_RS05585 0.27 -1.0
1,187,308 - ABZR87_RS05585 0.27 -3.6
1,187,416 + ABZR87_RS05585 0.40 +0.4
1,187,416 + ABZR87_RS05585 0.40 -1.9
1,187,417 - ABZR87_RS05585 0.40 +1.0
1,187,417 - ABZR87_RS05585 0.40 -0.1
1,187,482 + ABZR87_RS05585 0.48 -0.3
1,187,482 + ABZR87_RS05585 0.48 +0.4
1,187,483 - ABZR87_RS05585 0.48 -1.0
1,187,483 - ABZR87_RS05585 0.48 +0.9
1,187,483 - ABZR87_RS05585 0.48 -0.2
1,187,546 - ABZR87_RS05585 0.56 -2.0
1,187,616 + ABZR87_RS05585 0.64 -0.6
1,187,616 + ABZR87_RS05585 0.64 -0.3
1,187,616 + ABZR87_RS05585 0.64 +0.1
1,187,617 - ABZR87_RS05585 0.64 +0.3
1,187,617 - ABZR87_RS05585 0.64 -0.3
1,187,617 - ABZR87_RS05585 0.64 -0.2
1,187,617 - ABZR87_RS05585 0.64 -1.0
1,187,617 - ABZR87_RS05585 0.64 -0.2
1,187,617 - ABZR87_RS05585 0.64 +0.8
1,187,697 + ABZR87_RS05585 0.74 +0.3
1,187,697 + ABZR87_RS05585 0.74 +1.3
1,187,698 - ABZR87_RS05585 0.74 +0.2
1,187,725 + ABZR87_RS05585 0.77 +0.8
1,187,725 + ABZR87_RS05585 0.77 -1.1
1,187,725 + ABZR87_RS05585 0.77 +0.1
1,187,725 + ABZR87_RS05585 0.77 +0.2
1,187,725 + ABZR87_RS05585 0.77 -1.5
1,187,725 + ABZR87_RS05585 0.77 +0.2
1,187,725 + ABZR87_RS05585 0.77 -1.9
1,187,725 + ABZR87_RS05585 0.77 -0.5
1,187,725 + ABZR87_RS05585 0.77 +1.4
1,187,725 + ABZR87_RS05585 0.77 -0.1
1,187,725 + ABZR87_RS05585 0.77 +0.4
1,187,725 + ABZR87_RS05585 0.77 -0.7
1,187,725 + ABZR87_RS05585 0.77 +0.3
1,187,726 - ABZR87_RS05585 0.77 +1.2
1,187,726 - ABZR87_RS05585 0.77 -0.0
1,187,726 - ABZR87_RS05585 0.77 +0.7
1,187,726 - ABZR87_RS05585 0.77 -0.5
1,187,726 - ABZR87_RS05585 0.77 +0.2
1,187,726 - ABZR87_RS05585 0.77 +0.9
1,187,726 - ABZR87_RS05585 0.77 -2.2
1,187,726 - ABZR87_RS05585 0.77 +0.5
1,187,726 - ABZR87_RS05585 0.77 -0.2
1,187,726 - ABZR87_RS05585 0.77 +1.7
1,187,726 - ABZR87_RS05585 0.77 -0.1
1,187,726 - ABZR87_RS05585 0.77 +0.3
1,187,726 - ABZR87_RS05585 0.77 +0.4
1,187,727 + ABZR87_RS05585 0.77 +1.0
1,187,727 + ABZR87_RS05585 0.77 -0.9
1,187,727 + ABZR87_RS05585 0.77 -1.9
1,187,727 + ABZR87_RS05585 0.77 -0.0
1,187,727 + ABZR87_RS05585 0.77 -0.0
1,187,727 + ABZR87_RS05585 0.77 +0.7
1,187,727 + ABZR87_RS05585 0.77 +0.3
1,187,727 + ABZR87_RS05585 0.77 -1.2
1,187,728 - ABZR87_RS05585 0.78 +0.9
1,187,728 - ABZR87_RS05585 0.78 -1.0
1,187,728 - ABZR87_RS05585 0.78 +0.4
1,187,737 + ABZR87_RS05585 0.79 -0.2
1,187,737 + ABZR87_RS05585 0.79 +0.4
1,187,737 + ABZR87_RS05585 0.79 +0.3
1,187,737 + ABZR87_RS05585 0.79 +0.8
1,187,738 - ABZR87_RS05585 0.79 -0.1
1,187,738 - ABZR87_RS05585 0.79 +0.1
1,187,738 - ABZR87_RS05585 0.79 +0.4
1,187,782 + ABZR87_RS05585 0.84 -1.7
1,187,782 + ABZR87_RS05585 0.84 +0.3
1,187,782 + ABZR87_RS05585 0.84 +0.9
1,187,782 + ABZR87_RS05585 0.84 +0.9
1,187,782 + ABZR87_RS05585 0.84 +0.6
1,187,782 + ABZR87_RS05585 0.84 -0.3
1,187,782 + ABZR87_RS05585 0.84 -1.7
1,187,782 + ABZR87_RS05585 0.84 -0.6
1,187,782 + ABZR87_RS05585 0.84 +0.6
1,187,782 + ABZR87_RS05585 0.84 -0.3
1,187,782 + ABZR87_RS05585 0.84 +1.1
1,187,783 - ABZR87_RS05585 0.84 -1.2
1,187,783 - ABZR87_RS05585 0.84 +0.7
1,187,783 - ABZR87_RS05585 0.84 -0.5
1,187,783 - ABZR87_RS05585 0.84 +0.8
1,187,783 - ABZR87_RS05585 0.84 +1.0
1,187,783 - ABZR87_RS05585 0.84 +0.3
1,187,783 - ABZR87_RS05585 0.84 -0.5
1,187,783 - ABZR87_RS05585 0.84 -0.4
1,187,783 - ABZR87_RS05585 0.84 +0.3
1,187,783 - ABZR87_RS05585 0.84 -0.0
1,187,869 + +0.3
1,187,869 + -0.1

Or see this region's nucleotide sequence