Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3945

Experiment: BHIS with Sulfamonomethoxine 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3944 and BT3945 are separated by 2 nucleotidesBT3945 and BT3946 are separated by 52 nucleotidesBT3946 and BT3947 are separated by 8 nucleotides BT3944: BT3944 - putative chloride channel protein (NCBI ptt file), at 5,119,138 to 5,120,934 BT3944 BT3945: BT3945 - methionyl-tRNA formyltransferase (NCBI ptt file), at 5,120,937 to 5,121,905 BT3945 BT3946: BT3946 - ribulose-phosphate 3-epimerase (NCBI ptt file), at 5,121,958 to 5,122,608 BT3946 BT3947: BT3947 - competence protein (NCBI ptt file), at 5,122,617 to 5,124,719 BT3947 Position (kb) 5120 5121 5122Strain fitness (log2 ratio) -2 -1 0 1 2at 5121.951 kb on + strandat 5121.951 kb on + strandat 5121.951 kb on + strandat 5122.633 kb on + strandat 5122.641 kb on + strandat 5122.647 kb on + strandat 5122.647 kb on + strandat 5122.647 kb on + strandat 5122.647 kb on + strandat 5122.650 kb on - strandat 5122.730 kb on + strandat 5122.774 kb on - strandat 5122.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Sulfamonomethoxine 0.1 mM
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5,121,951 + -1.6
5,121,951 + -1.6
5,121,951 + +0.4
5,122,633 + -0.7
5,122,641 + -0.0
5,122,647 + -0.8
5,122,647 + -2.6
5,122,647 + +2.3
5,122,647 + -2.4
5,122,650 - -0.6
5,122,730 + +0.9
5,122,774 - -1.5
5,122,814 - -1.1

Or see this region's nucleotide sequence