Strain Fitness in Sinorhizobium meliloti 1021 around SMc04019

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04018 and SMc04019 are separated by 119 nucleotidesSMc04019 and SMc04020 are separated by 103 nucleotides SMc04018: SMc04018 - 5'-nucleotidase, at 3,014,867 to 3,016,753 SMc04018 SMc04019: SMc04019 - ferrochelatase, at 3,016,873 to 3,017,901 SMc04019 SMc04020: SMc04020 - hypothetical protein, at 3,018,005 to 3,018,991 SMc04020 Position (kb) 3016 3017 3018Strain fitness (log2 ratio) -1 0 1at 3016.199 kb on + strand, within SMc04018at 3016.200 kb on - strand, within SMc04018at 3016.295 kb on + strand, within SMc04018at 3016.373 kb on + strand, within SMc04018at 3016.373 kb on + strand, within SMc04018at 3016.380 kb on - strand, within SMc04018at 3016.413 kb on - strand, within SMc04018at 3016.413 kb on - strand, within SMc04018at 3016.442 kb on + strand, within SMc04018at 3016.652 kb on + strandat 3016.652 kb on + strandat 3017.932 kb on + strandat 3017.932 kb on + strandat 3017.932 kb on + strandat 3017.932 kb on + strandat 3017.932 kb on + strandat 3017.933 kb on - strandat 3018.018 kb on - strandat 3018.099 kb on - strandat 3018.100 kb on + strandat 3018.100 kb on + strandat 3018.100 kb on + strandat 3018.101 kb on - strandat 3018.123 kb on - strand, within SMc04020at 3018.285 kb on + strand, within SMc04020at 3018.442 kb on - strand, within SMc04020at 3018.771 kb on - strand, within SMc04020at 3018.789 kb on - strand, within SMc04020at 3018.886 kb on - strand, within SMc04020

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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3,016,199 + SMc04018 0.71 +0.7
3,016,200 - SMc04018 0.71 -0.2
3,016,295 + SMc04018 0.76 +0.3
3,016,373 + SMc04018 0.80 -0.8
3,016,373 + SMc04018 0.80 +0.6
3,016,380 - SMc04018 0.80 -1.0
3,016,413 - SMc04018 0.82 -0.2
3,016,413 - SMc04018 0.82 +0.3
3,016,442 + SMc04018 0.83 -0.8
3,016,652 + +0.2
3,016,652 + -0.4
3,017,932 + -0.6
3,017,932 + -1.1
3,017,932 + +0.5
3,017,932 + -0.4
3,017,932 + +0.2
3,017,933 - -0.2
3,018,018 - +0.4
3,018,099 - -0.4
3,018,100 + +0.2
3,018,100 + -0.9
3,018,100 + -0.5
3,018,101 - +0.2
3,018,123 - SMc04020 0.12 -0.6
3,018,285 + SMc04020 0.28 +0.3
3,018,442 - SMc04020 0.44 -0.1
3,018,771 - SMc04020 0.78 +0.2
3,018,789 - SMc04020 0.79 +0.2
3,018,886 - SMc04020 0.89 -1.0

Or see this region's nucleotide sequence